Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.194.1 and Xcc-8004.195.1 are separated by 133 nucleotides Xcc-8004.195.1 and Xcc-8004.196.1 are separated by 129 nucleotides Xcc-8004.196.1 and Xcc-8004.197.1 are separated by 204 nucleotides
Xcc-8004.194.1: Xcc-8004.194.1 - putative iron-regulated membrane protein, at 185,667 to 187,202
Xcc-8004.194.1
Xcc-8004.195.1: Xcc-8004.195.1 - phosphoesterase, putative, at 187,336 to 187,839
Xcc-8004.195.1
Xcc-8004.196.1: Xcc-8004.196.1 - L-fucose dehydrogenase, at 187,969 to 189,117
Xcc-8004.196.1
Xcc-8004.197.1: Xcc-8004.197.1 - rhamnogalacturonan acetylesterase, at 189,322 to 190,158
Xcc-8004.197.1
Position (kb) 187
188
189
190 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 186.990 kb on + strand, within Xcc-8004.194.1 at 186.991 kb on - strand, within Xcc-8004.194.1 at 186.991 kb on - strand, within Xcc-8004.194.1 at 187.132 kb on - strand at 187.253 kb on + strand at 187.724 kb on - strand, within Xcc-8004.195.1 at 187.817 kb on + strand at 187.817 kb on + strand at 187.817 kb on + strand at 187.818 kb on - strand at 187.818 kb on - strand at 187.818 kb on - strand at 187.974 kb on + strand at 187.974 kb on + strand at 187.975 kb on - strand at 187.975 kb on - strand at 187.975 kb on - strand at 187.975 kb on - strand at 187.975 kb on - strand at 187.975 kb on - strand at 187.975 kb on - strand at 188.110 kb on - strand, within Xcc-8004.196.1 at 188.251 kb on + strand, within Xcc-8004.196.1 at 188.251 kb on + strand, within Xcc-8004.196.1 at 188.316 kb on + strand, within Xcc-8004.196.1 at 188.317 kb on - strand, within Xcc-8004.196.1 at 188.335 kb on + strand, within Xcc-8004.196.1 at 188.335 kb on + strand, within Xcc-8004.196.1 at 188.335 kb on + strand, within Xcc-8004.196.1 at 188.335 kb on + strand, within Xcc-8004.196.1 at 188.335 kb on + strand, within Xcc-8004.196.1 at 188.335 kb on + strand, within Xcc-8004.196.1 at 188.335 kb on + strand, within Xcc-8004.196.1 at 188.335 kb on + strand, within Xcc-8004.196.1 at 188.336 kb on - strand, within Xcc-8004.196.1 at 188.336 kb on - strand, within Xcc-8004.196.1 at 188.336 kb on - strand, within Xcc-8004.196.1 at 188.336 kb on - strand, within Xcc-8004.196.1 at 188.336 kb on - strand, within Xcc-8004.196.1 at 188.336 kb on - strand, within Xcc-8004.196.1 at 188.336 kb on - strand, within Xcc-8004.196.1 at 188.435 kb on - strand, within Xcc-8004.196.1 at 188.509 kb on + strand, within Xcc-8004.196.1 at 188.509 kb on + strand, within Xcc-8004.196.1 at 188.509 kb on + strand, within Xcc-8004.196.1 at 188.510 kb on - strand, within Xcc-8004.196.1 at 188.510 kb on - strand, within Xcc-8004.196.1 at 188.510 kb on - strand, within Xcc-8004.196.1 at 188.510 kb on - strand, within Xcc-8004.196.1 at 188.848 kb on + strand, within Xcc-8004.196.1 at 188.849 kb on - strand, within Xcc-8004.196.1 at 188.849 kb on - strand, within Xcc-8004.196.1 at 188.931 kb on + strand, within Xcc-8004.196.1 at 188.932 kb on - strand, within Xcc-8004.196.1 at 188.932 kb on - strand, within Xcc-8004.196.1 at 189.159 kb on + strand at 189.179 kb on + strand at 189.179 kb on + strand at 189.179 kb on + strand at 189.180 kb on - strand at 189.180 kb on - strand at 189.180 kb on - strand at 189.180 kb on - strand at 189.180 kb on - strand at 189.208 kb on + strand at 189.209 kb on - strand at 189.423 kb on - strand, within Xcc-8004.197.1 at 189.423 kb on - strand, within Xcc-8004.197.1 at 189.827 kb on + strand, within Xcc-8004.197.1 at 189.827 kb on + strand, within Xcc-8004.197.1 at 189.827 kb on + strand, within Xcc-8004.197.1 at 189.828 kb on - strand, within Xcc-8004.197.1 at 189.828 kb on - strand, within Xcc-8004.197.1 at 189.828 kb on - strand, within Xcc-8004.197.1 at 189.996 kb on + strand, within Xcc-8004.197.1 at 189.996 kb on + strand, within Xcc-8004.197.1 at 189.997 kb on - strand, within Xcc-8004.197.1 at 189.997 kb on - strand, within Xcc-8004.197.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X remove 186,990 + Xcc-8004.194.1 0.86 +0.6 186,991 - Xcc-8004.194.1 0.86 -1.0 186,991 - Xcc-8004.194.1 0.86 -0.8 187,132 - +0.0 187,253 + +0.1 187,724 - Xcc-8004.195.1 0.77 +0.2 187,817 + -0.7 187,817 + -0.9 187,817 + +0.2 187,818 - -1.5 187,818 - +0.5 187,818 - +0.0 187,974 + -0.5 187,974 + +0.2 187,975 - +0.6 187,975 - -0.5 187,975 - -0.3 187,975 - +0.0 187,975 - -1.1 187,975 - -1.5 187,975 - -2.2 188,110 - Xcc-8004.196.1 0.12 -0.9 188,251 + Xcc-8004.196.1 0.25 +0.1 188,251 + Xcc-8004.196.1 0.25 +0.3 188,316 + Xcc-8004.196.1 0.30 -0.3 188,317 - Xcc-8004.196.1 0.30 +0.4 188,335 + Xcc-8004.196.1 0.32 -1.9 188,335 + Xcc-8004.196.1 0.32 +0.4 188,335 + Xcc-8004.196.1 0.32 -0.4 188,335 + Xcc-8004.196.1 0.32 +2.0 188,335 + Xcc-8004.196.1 0.32 -2.2 188,335 + Xcc-8004.196.1 0.32 -0.9 188,335 + Xcc-8004.196.1 0.32 +0.4 188,335 + Xcc-8004.196.1 0.32 +1.8 188,336 - Xcc-8004.196.1 0.32 +1.4 188,336 - Xcc-8004.196.1 0.32 +0.4 188,336 - Xcc-8004.196.1 0.32 +0.5 188,336 - Xcc-8004.196.1 0.32 -3.0 188,336 - Xcc-8004.196.1 0.32 +1.4 188,336 - Xcc-8004.196.1 0.32 +0.7 188,336 - Xcc-8004.196.1 0.32 +3.0 188,435 - Xcc-8004.196.1 0.41 -1.7 188,509 + Xcc-8004.196.1 0.47 -0.3 188,509 + Xcc-8004.196.1 0.47 -0.0 188,509 + Xcc-8004.196.1 0.47 +0.6 188,510 - Xcc-8004.196.1 0.47 -1.0 188,510 - Xcc-8004.196.1 0.47 -1.0 188,510 - Xcc-8004.196.1 0.47 -0.5 188,510 - Xcc-8004.196.1 0.47 -0.8 188,848 + Xcc-8004.196.1 0.77 +0.8 188,849 - Xcc-8004.196.1 0.77 -0.4 188,849 - Xcc-8004.196.1 0.77 -0.3 188,931 + Xcc-8004.196.1 0.84 +1.1 188,932 - Xcc-8004.196.1 0.84 -0.3 188,932 - Xcc-8004.196.1 0.84 +0.3 189,159 + +1.0 189,179 + -0.6 189,179 + -0.3 189,179 + -0.2 189,180 - -2.0 189,180 - +0.7 189,180 - +0.0 189,180 - +0.4 189,180 - +0.6 189,208 + -0.2 189,209 - -2.5 189,423 - Xcc-8004.197.1 0.12 -0.6 189,423 - Xcc-8004.197.1 0.12 +0.4 189,827 + Xcc-8004.197.1 0.60 -0.8 189,827 + Xcc-8004.197.1 0.60 -1.3 189,827 + Xcc-8004.197.1 0.60 +0.5 189,828 - Xcc-8004.197.1 0.60 -0.1 189,828 - Xcc-8004.197.1 0.60 -1.1 189,828 - Xcc-8004.197.1 0.60 -1.6 189,996 + Xcc-8004.197.1 0.81 -0.8 189,996 + Xcc-8004.197.1 0.81 -1.3 189,997 - Xcc-8004.197.1 0.81 -0.4 189,997 - Xcc-8004.197.1 0.81 -1.3
Or see this region's nucleotide sequence