Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.194.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.192.1 and Xcc-8004.193.1 overlap by 11 nucleotidesXcc-8004.193.1 and Xcc-8004.194.1 overlap by 4 nucleotidesXcc-8004.194.1 and Xcc-8004.195.1 are separated by 133 nucleotidesXcc-8004.195.1 and Xcc-8004.196.1 are separated by 129 nucleotides Xcc-8004.192.1: Xcc-8004.192.1 - putative; ORF located using Glimmer/Genemark, at 184,914 to 185,408 Xcc-8004.192.1 Xcc-8004.193.1: Xcc-8004.193.1 - putative; ORF located using Glimmer/Genemark, at 185,398 to 185,670 Xcc-8004.193.1 Xcc-8004.194.1: Xcc-8004.194.1 - putative iron-regulated membrane protein, at 185,667 to 187,202 Xcc-8004.194.1 Xcc-8004.195.1: Xcc-8004.195.1 - phosphoesterase, putative, at 187,336 to 187,839 Xcc-8004.195.1 Xcc-8004.196.1: Xcc-8004.196.1 - L-fucose dehydrogenase, at 187,969 to 189,117 Xcc-8004.196.1 Position (kb) 185 186 187 188Strain fitness (log2 ratio) -2 -1 0 1 2 3at 184.670 kb on + strandat 184.670 kb on + strandat 184.671 kb on - strandat 184.671 kb on - strandat 184.671 kb on - strandat 184.678 kb on + strandat 184.678 kb on + strandat 184.678 kb on + strandat 184.678 kb on + strandat 184.679 kb on - strandat 184.890 kb on + strandat 185.066 kb on + strand, within Xcc-8004.192.1at 185.066 kb on + strand, within Xcc-8004.192.1at 185.066 kb on + strand, within Xcc-8004.192.1at 185.066 kb on + strand, within Xcc-8004.192.1at 185.066 kb on + strand, within Xcc-8004.192.1at 185.067 kb on - strand, within Xcc-8004.192.1at 185.067 kb on - strand, within Xcc-8004.192.1at 185.067 kb on - strand, within Xcc-8004.192.1at 185.067 kb on - strand, within Xcc-8004.192.1at 185.074 kb on + strand, within Xcc-8004.192.1at 185.075 kb on - strand, within Xcc-8004.192.1at 185.114 kb on + strand, within Xcc-8004.192.1at 185.114 kb on + strand, within Xcc-8004.192.1at 185.114 kb on + strand, within Xcc-8004.192.1at 185.114 kb on + strand, within Xcc-8004.192.1at 185.133 kb on + strand, within Xcc-8004.192.1at 185.170 kb on - strand, within Xcc-8004.192.1at 185.170 kb on - strand, within Xcc-8004.192.1at 185.288 kb on + strand, within Xcc-8004.192.1at 185.406 kb on + strandat 185.406 kb on + strandat 185.406 kb on + strandat 185.406 kb on + strandat 185.493 kb on + strand, within Xcc-8004.193.1at 185.493 kb on + strand, within Xcc-8004.193.1at 185.493 kb on + strand, within Xcc-8004.193.1at 185.493 kb on + strand, within Xcc-8004.193.1at 185.493 kb on + strand, within Xcc-8004.193.1at 185.493 kb on + strand, within Xcc-8004.193.1at 185.497 kb on + strand, within Xcc-8004.193.1at 185.497 kb on + strand, within Xcc-8004.193.1at 185.497 kb on + strand, within Xcc-8004.193.1at 185.497 kb on + strand, within Xcc-8004.193.1at 185.497 kb on + strand, within Xcc-8004.193.1at 185.497 kb on + strand, within Xcc-8004.193.1at 185.497 kb on + strand, within Xcc-8004.193.1at 185.498 kb on - strand, within Xcc-8004.193.1at 185.498 kb on - strand, within Xcc-8004.193.1at 185.498 kb on - strand, within Xcc-8004.193.1at 185.498 kb on - strand, within Xcc-8004.193.1at 185.498 kb on - strand, within Xcc-8004.193.1at 185.499 kb on + strand, within Xcc-8004.193.1at 185.499 kb on + strand, within Xcc-8004.193.1at 185.499 kb on + strand, within Xcc-8004.193.1at 185.500 kb on - strand, within Xcc-8004.193.1at 185.500 kb on - strand, within Xcc-8004.193.1at 185.500 kb on - strand, within Xcc-8004.193.1at 185.617 kb on + strand, within Xcc-8004.193.1at 185.618 kb on - strand, within Xcc-8004.193.1at 185.618 kb on - strand, within Xcc-8004.193.1at 185.751 kb on + strandat 185.751 kb on + strandat 185.751 kb on + strandat 185.752 kb on - strandat 185.946 kb on + strand, within Xcc-8004.194.1at 185.946 kb on + strand, within Xcc-8004.194.1at 185.947 kb on - strand, within Xcc-8004.194.1at 185.947 kb on - strand, within Xcc-8004.194.1at 185.947 kb on - strand, within Xcc-8004.194.1at 185.991 kb on + strand, within Xcc-8004.194.1at 186.057 kb on + strand, within Xcc-8004.194.1at 186.102 kb on + strand, within Xcc-8004.194.1at 186.102 kb on + strand, within Xcc-8004.194.1at 186.102 kb on + strand, within Xcc-8004.194.1at 186.102 kb on + strand, within Xcc-8004.194.1at 186.102 kb on + strand, within Xcc-8004.194.1at 186.103 kb on - strand, within Xcc-8004.194.1at 186.103 kb on - strand, within Xcc-8004.194.1at 186.103 kb on - strand, within Xcc-8004.194.1at 186.103 kb on - strand, within Xcc-8004.194.1at 186.499 kb on - strand, within Xcc-8004.194.1at 186.499 kb on - strand, within Xcc-8004.194.1at 186.537 kb on + strand, within Xcc-8004.194.1at 186.537 kb on + strand, within Xcc-8004.194.1at 186.538 kb on - strand, within Xcc-8004.194.1at 186.538 kb on - strand, within Xcc-8004.194.1at 186.714 kb on + strand, within Xcc-8004.194.1at 186.714 kb on + strand, within Xcc-8004.194.1at 186.715 kb on - strand, within Xcc-8004.194.1at 186.715 kb on - strand, within Xcc-8004.194.1at 186.750 kb on + strand, within Xcc-8004.194.1at 186.751 kb on - strand, within Xcc-8004.194.1at 186.751 kb on - strand, within Xcc-8004.194.1at 186.927 kb on + strand, within Xcc-8004.194.1at 186.928 kb on - strand, within Xcc-8004.194.1at 186.928 kb on - strand, within Xcc-8004.194.1at 186.990 kb on + strand, within Xcc-8004.194.1at 186.991 kb on - strand, within Xcc-8004.194.1at 186.991 kb on - strand, within Xcc-8004.194.1at 187.132 kb on - strandat 187.253 kb on + strandat 187.724 kb on - strand, within Xcc-8004.195.1at 187.817 kb on + strandat 187.817 kb on + strandat 187.817 kb on + strandat 187.818 kb on - strandat 187.818 kb on - strandat 187.818 kb on - strandat 187.974 kb on + strandat 187.974 kb on + strandat 187.975 kb on - strandat 187.975 kb on - strandat 187.975 kb on - strandat 187.975 kb on - strandat 187.975 kb on - strandat 187.975 kb on - strandat 187.975 kb on - strandat 188.110 kb on - strand, within Xcc-8004.196.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
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184,670 + -0.8
184,670 + +0.1
184,671 - -0.3
184,671 - -0.8
184,671 - +0.3
184,678 + +0.6
184,678 + -0.2
184,678 + +0.0
184,678 + +0.2
184,679 - +0.1
184,890 + +1.7
185,066 + Xcc-8004.192.1 0.31 +0.1
185,066 + Xcc-8004.192.1 0.31 -0.9
185,066 + Xcc-8004.192.1 0.31 -0.9
185,066 + Xcc-8004.192.1 0.31 +0.2
185,066 + Xcc-8004.192.1 0.31 -1.4
185,067 - Xcc-8004.192.1 0.31 -0.2
185,067 - Xcc-8004.192.1 0.31 +0.2
185,067 - Xcc-8004.192.1 0.31 +0.1
185,067 - Xcc-8004.192.1 0.31 +0.8
185,074 + Xcc-8004.192.1 0.32 -2.3
185,075 - Xcc-8004.192.1 0.33 -1.1
185,114 + Xcc-8004.192.1 0.40 -0.5
185,114 + Xcc-8004.192.1 0.40 -2.0
185,114 + Xcc-8004.192.1 0.40 -0.0
185,114 + Xcc-8004.192.1 0.40 -0.9
185,133 + Xcc-8004.192.1 0.44 -1.8
185,170 - Xcc-8004.192.1 0.52 -0.0
185,170 - Xcc-8004.192.1 0.52 -0.9
185,288 + Xcc-8004.192.1 0.76 +0.1
185,406 + -0.1
185,406 + -1.1
185,406 + -0.6
185,406 + +0.0
185,493 + Xcc-8004.193.1 0.35 -0.2
185,493 + Xcc-8004.193.1 0.35 -0.2
185,493 + Xcc-8004.193.1 0.35 +0.1
185,493 + Xcc-8004.193.1 0.35 -0.9
185,493 + Xcc-8004.193.1 0.35 +0.1
185,493 + Xcc-8004.193.1 0.35 -1.2
185,497 + Xcc-8004.193.1 0.36 -1.5
185,497 + Xcc-8004.193.1 0.36 -0.2
185,497 + Xcc-8004.193.1 0.36 -0.3
185,497 + Xcc-8004.193.1 0.36 -1.2
185,497 + Xcc-8004.193.1 0.36 +2.0
185,497 + Xcc-8004.193.1 0.36 +1.3
185,497 + Xcc-8004.193.1 0.36 +0.1
185,498 - Xcc-8004.193.1 0.37 -0.5
185,498 - Xcc-8004.193.1 0.37 -0.6
185,498 - Xcc-8004.193.1 0.37 +0.3
185,498 - Xcc-8004.193.1 0.37 -1.9
185,498 - Xcc-8004.193.1 0.37 +0.2
185,499 + Xcc-8004.193.1 0.37 -1.3
185,499 + Xcc-8004.193.1 0.37 +0.1
185,499 + Xcc-8004.193.1 0.37 -2.0
185,500 - Xcc-8004.193.1 0.37 +3.0
185,500 - Xcc-8004.193.1 0.37 -0.3
185,500 - Xcc-8004.193.1 0.37 -0.1
185,617 + Xcc-8004.193.1 0.80 -1.5
185,618 - Xcc-8004.193.1 0.81 +1.0
185,618 - Xcc-8004.193.1 0.81 -2.2
185,751 + -0.4
185,751 + -0.5
185,751 + -1.0
185,752 - -1.0
185,946 + Xcc-8004.194.1 0.18 +0.0
185,946 + Xcc-8004.194.1 0.18 +0.5
185,947 - Xcc-8004.194.1 0.18 -0.3
185,947 - Xcc-8004.194.1 0.18 +0.4
185,947 - Xcc-8004.194.1 0.18 -1.4
185,991 + Xcc-8004.194.1 0.21 -0.4
186,057 + Xcc-8004.194.1 0.25 -1.9
186,102 + Xcc-8004.194.1 0.28 +0.5
186,102 + Xcc-8004.194.1 0.28 -0.6
186,102 + Xcc-8004.194.1 0.28 +0.4
186,102 + Xcc-8004.194.1 0.28 +0.6
186,102 + Xcc-8004.194.1 0.28 +0.1
186,103 - Xcc-8004.194.1 0.28 +1.7
186,103 - Xcc-8004.194.1 0.28 +1.3
186,103 - Xcc-8004.194.1 0.28 +0.5
186,103 - Xcc-8004.194.1 0.28 -0.3
186,499 - Xcc-8004.194.1 0.54 -1.6
186,499 - Xcc-8004.194.1 0.54 -0.6
186,537 + Xcc-8004.194.1 0.57 +0.7
186,537 + Xcc-8004.194.1 0.57 +1.7
186,538 - Xcc-8004.194.1 0.57 +0.9
186,538 - Xcc-8004.194.1 0.57 -0.5
186,714 + Xcc-8004.194.1 0.68 +0.4
186,714 + Xcc-8004.194.1 0.68 -0.2
186,715 - Xcc-8004.194.1 0.68 -0.4
186,715 - Xcc-8004.194.1 0.68 +0.1
186,750 + Xcc-8004.194.1 0.71 +0.0
186,751 - Xcc-8004.194.1 0.71 +1.4
186,751 - Xcc-8004.194.1 0.71 +0.8
186,927 + Xcc-8004.194.1 0.82 +0.1
186,928 - Xcc-8004.194.1 0.82 +0.3
186,928 - Xcc-8004.194.1 0.82 -1.2
186,990 + Xcc-8004.194.1 0.86 +0.6
186,991 - Xcc-8004.194.1 0.86 -1.0
186,991 - Xcc-8004.194.1 0.86 -0.8
187,132 - +0.0
187,253 + +0.1
187,724 - Xcc-8004.195.1 0.77 +0.2
187,817 + -0.7
187,817 + -0.9
187,817 + +0.2
187,818 - -1.5
187,818 - +0.5
187,818 - +0.0
187,974 + -0.5
187,974 + +0.2
187,975 - +0.6
187,975 - -0.5
187,975 - -0.3
187,975 - +0.0
187,975 - -1.1
187,975 - -1.5
187,975 - -2.2
188,110 - Xcc-8004.196.1 0.12 -0.9

Or see this region's nucleotide sequence