Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.189.1 and Xcc-8004.192.1 are separated by 381 nucleotides Xcc-8004.192.1 and Xcc-8004.193.1 overlap by 11 nucleotides Xcc-8004.193.1 and Xcc-8004.194.1 overlap by 4 nucleotides
Xcc-8004.189.1: Xcc-8004.189.1 - Mobile element protein, at 184,341 to 184,532
Xcc-8004.189.1
Xcc-8004.192.1: Xcc-8004.192.1 - putative; ORF located using Glimmer/Genemark, at 184,914 to 185,408
Xcc-8004.192.1
Xcc-8004.193.1: Xcc-8004.193.1 - putative; ORF located using Glimmer/Genemark, at 185,398 to 185,670
Xcc-8004.193.1
Xcc-8004.194.1: Xcc-8004.194.1 - putative iron-regulated membrane protein, at 185,667 to 187,202
Xcc-8004.194.1
Position (kb) 185
186 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 184.427 kb on - strand, within Xcc-8004.189.1 at 184.603 kb on + strand at 184.616 kb on - strand at 184.622 kb on + strand at 184.623 kb on - strand at 184.623 kb on - strand at 184.670 kb on + strand at 184.670 kb on + strand at 184.671 kb on - strand at 184.671 kb on - strand at 184.671 kb on - strand at 184.678 kb on + strand at 184.678 kb on + strand at 184.678 kb on + strand at 184.678 kb on + strand at 184.679 kb on - strand at 184.890 kb on + strand at 185.066 kb on + strand, within Xcc-8004.192.1 at 185.066 kb on + strand, within Xcc-8004.192.1 at 185.066 kb on + strand, within Xcc-8004.192.1 at 185.066 kb on + strand, within Xcc-8004.192.1 at 185.066 kb on + strand, within Xcc-8004.192.1 at 185.067 kb on - strand, within Xcc-8004.192.1 at 185.067 kb on - strand, within Xcc-8004.192.1 at 185.067 kb on - strand, within Xcc-8004.192.1 at 185.067 kb on - strand, within Xcc-8004.192.1 at 185.074 kb on + strand, within Xcc-8004.192.1 at 185.075 kb on - strand, within Xcc-8004.192.1 at 185.114 kb on + strand, within Xcc-8004.192.1 at 185.114 kb on + strand, within Xcc-8004.192.1 at 185.114 kb on + strand, within Xcc-8004.192.1 at 185.114 kb on + strand, within Xcc-8004.192.1 at 185.133 kb on + strand, within Xcc-8004.192.1 at 185.170 kb on - strand, within Xcc-8004.192.1 at 185.170 kb on - strand, within Xcc-8004.192.1 at 185.288 kb on + strand, within Xcc-8004.192.1 at 185.406 kb on + strand at 185.406 kb on + strand at 185.406 kb on + strand at 185.406 kb on + strand at 185.493 kb on + strand, within Xcc-8004.193.1 at 185.493 kb on + strand, within Xcc-8004.193.1 at 185.493 kb on + strand, within Xcc-8004.193.1 at 185.493 kb on + strand, within Xcc-8004.193.1 at 185.493 kb on + strand, within Xcc-8004.193.1 at 185.493 kb on + strand, within Xcc-8004.193.1 at 185.497 kb on + strand, within Xcc-8004.193.1 at 185.497 kb on + strand, within Xcc-8004.193.1 at 185.497 kb on + strand, within Xcc-8004.193.1 at 185.497 kb on + strand, within Xcc-8004.193.1 at 185.497 kb on + strand, within Xcc-8004.193.1 at 185.497 kb on + strand, within Xcc-8004.193.1 at 185.497 kb on + strand, within Xcc-8004.193.1 at 185.498 kb on - strand, within Xcc-8004.193.1 at 185.498 kb on - strand, within Xcc-8004.193.1 at 185.498 kb on - strand, within Xcc-8004.193.1 at 185.498 kb on - strand, within Xcc-8004.193.1 at 185.498 kb on - strand, within Xcc-8004.193.1 at 185.499 kb on + strand, within Xcc-8004.193.1 at 185.499 kb on + strand, within Xcc-8004.193.1 at 185.499 kb on + strand, within Xcc-8004.193.1 at 185.500 kb on - strand, within Xcc-8004.193.1 at 185.500 kb on - strand, within Xcc-8004.193.1 at 185.500 kb on - strand, within Xcc-8004.193.1 at 185.617 kb on + strand, within Xcc-8004.193.1 at 185.618 kb on - strand, within Xcc-8004.193.1 at 185.618 kb on - strand, within Xcc-8004.193.1 at 185.751 kb on + strand at 185.751 kb on + strand at 185.751 kb on + strand at 185.752 kb on - strand at 185.946 kb on + strand, within Xcc-8004.194.1 at 185.946 kb on + strand, within Xcc-8004.194.1 at 185.947 kb on - strand, within Xcc-8004.194.1 at 185.947 kb on - strand, within Xcc-8004.194.1 at 185.947 kb on - strand, within Xcc-8004.194.1 at 185.991 kb on + strand, within Xcc-8004.194.1 at 186.057 kb on + strand, within Xcc-8004.194.1 at 186.102 kb on + strand, within Xcc-8004.194.1 at 186.102 kb on + strand, within Xcc-8004.194.1 at 186.102 kb on + strand, within Xcc-8004.194.1 at 186.102 kb on + strand, within Xcc-8004.194.1 at 186.102 kb on + strand, within Xcc-8004.194.1 at 186.103 kb on - strand, within Xcc-8004.194.1 at 186.103 kb on - strand, within Xcc-8004.194.1 at 186.103 kb on - strand, within Xcc-8004.194.1 at 186.103 kb on - strand, within Xcc-8004.194.1 at 186.499 kb on - strand, within Xcc-8004.194.1 at 186.499 kb on - strand, within Xcc-8004.194.1 at 186.537 kb on + strand, within Xcc-8004.194.1 at 186.537 kb on + strand, within Xcc-8004.194.1 at 186.538 kb on - strand, within Xcc-8004.194.1 at 186.538 kb on - strand, within Xcc-8004.194.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X remove 184,427 - Xcc-8004.189.1 0.45 +0.7 184,603 + -1.3 184,616 - +0.6 184,622 + +0.4 184,623 - -0.0 184,623 - +0.4 184,670 + -0.8 184,670 + +0.1 184,671 - -0.3 184,671 - -0.8 184,671 - +0.3 184,678 + +0.6 184,678 + -0.2 184,678 + +0.0 184,678 + +0.2 184,679 - +0.1 184,890 + +1.7 185,066 + Xcc-8004.192.1 0.31 +0.1 185,066 + Xcc-8004.192.1 0.31 -0.9 185,066 + Xcc-8004.192.1 0.31 -0.9 185,066 + Xcc-8004.192.1 0.31 +0.2 185,066 + Xcc-8004.192.1 0.31 -1.4 185,067 - Xcc-8004.192.1 0.31 -0.2 185,067 - Xcc-8004.192.1 0.31 +0.2 185,067 - Xcc-8004.192.1 0.31 +0.1 185,067 - Xcc-8004.192.1 0.31 +0.8 185,074 + Xcc-8004.192.1 0.32 -2.3 185,075 - Xcc-8004.192.1 0.33 -1.1 185,114 + Xcc-8004.192.1 0.40 -0.5 185,114 + Xcc-8004.192.1 0.40 -2.0 185,114 + Xcc-8004.192.1 0.40 -0.0 185,114 + Xcc-8004.192.1 0.40 -0.9 185,133 + Xcc-8004.192.1 0.44 -1.8 185,170 - Xcc-8004.192.1 0.52 -0.0 185,170 - Xcc-8004.192.1 0.52 -0.9 185,288 + Xcc-8004.192.1 0.76 +0.1 185,406 + -0.1 185,406 + -1.1 185,406 + -0.6 185,406 + +0.0 185,493 + Xcc-8004.193.1 0.35 -0.2 185,493 + Xcc-8004.193.1 0.35 -0.2 185,493 + Xcc-8004.193.1 0.35 +0.1 185,493 + Xcc-8004.193.1 0.35 -0.9 185,493 + Xcc-8004.193.1 0.35 +0.1 185,493 + Xcc-8004.193.1 0.35 -1.2 185,497 + Xcc-8004.193.1 0.36 -1.5 185,497 + Xcc-8004.193.1 0.36 -0.2 185,497 + Xcc-8004.193.1 0.36 -0.3 185,497 + Xcc-8004.193.1 0.36 -1.2 185,497 + Xcc-8004.193.1 0.36 +2.0 185,497 + Xcc-8004.193.1 0.36 +1.3 185,497 + Xcc-8004.193.1 0.36 +0.1 185,498 - Xcc-8004.193.1 0.37 -0.5 185,498 - Xcc-8004.193.1 0.37 -0.6 185,498 - Xcc-8004.193.1 0.37 +0.3 185,498 - Xcc-8004.193.1 0.37 -1.9 185,498 - Xcc-8004.193.1 0.37 +0.2 185,499 + Xcc-8004.193.1 0.37 -1.3 185,499 + Xcc-8004.193.1 0.37 +0.1 185,499 + Xcc-8004.193.1 0.37 -2.0 185,500 - Xcc-8004.193.1 0.37 +3.0 185,500 - Xcc-8004.193.1 0.37 -0.3 185,500 - Xcc-8004.193.1 0.37 -0.1 185,617 + Xcc-8004.193.1 0.80 -1.5 185,618 - Xcc-8004.193.1 0.81 +1.0 185,618 - Xcc-8004.193.1 0.81 -2.2 185,751 + -0.4 185,751 + -0.5 185,751 + -1.0 185,752 - -1.0 185,946 + Xcc-8004.194.1 0.18 +0.0 185,946 + Xcc-8004.194.1 0.18 +0.5 185,947 - Xcc-8004.194.1 0.18 -0.3 185,947 - Xcc-8004.194.1 0.18 +0.4 185,947 - Xcc-8004.194.1 0.18 -1.4 185,991 + Xcc-8004.194.1 0.21 -0.4 186,057 + Xcc-8004.194.1 0.25 -1.9 186,102 + Xcc-8004.194.1 0.28 +0.5 186,102 + Xcc-8004.194.1 0.28 -0.6 186,102 + Xcc-8004.194.1 0.28 +0.4 186,102 + Xcc-8004.194.1 0.28 +0.6 186,102 + Xcc-8004.194.1 0.28 +0.1 186,103 - Xcc-8004.194.1 0.28 +1.7 186,103 - Xcc-8004.194.1 0.28 +1.3 186,103 - Xcc-8004.194.1 0.28 +0.5 186,103 - Xcc-8004.194.1 0.28 -0.3 186,499 - Xcc-8004.194.1 0.54 -1.6 186,499 - Xcc-8004.194.1 0.54 -0.6 186,537 + Xcc-8004.194.1 0.57 +0.7 186,537 + Xcc-8004.194.1 0.57 +1.7 186,538 - Xcc-8004.194.1 0.57 +0.9 186,538 - Xcc-8004.194.1 0.57 -0.5
Or see this region's nucleotide sequence