Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.180.1 and Xcc-8004.181.1 overlap by 78 nucleotides Xcc-8004.181.1 and Xcc-8004.183.1 are separated by 185 nucleotides Xcc-8004.183.1 and Xcc-8004.184.1 are separated by 261 nucleotides
Xcc-8004.180.1: Xcc-8004.180.1 - RhsD protein, at 173,232 to 173,657
Xcc-8004.180.1
Xcc-8004.181.1: Xcc-8004.181.1 - putative; ORF located using Glimmer/Genemark, at 173,580 to 174,251
Xcc-8004.181.1
Xcc-8004.183.1: Xcc-8004.183.1 - FIG01211553: hypothetical protein, at 174,437 to 174,769
Xcc-8004.183.1
Xcc-8004.184.1: Xcc-8004.184.1 - Alpha-amylase (EC 3.2.1.1), at 175,031 to 178,147
Xcc-8004.184.1
Position (kb) 174
175 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 173.439 kb on + strand, within Xcc-8004.180.1 at 173.440 kb on - strand, within Xcc-8004.180.1 at 173.440 kb on - strand, within Xcc-8004.180.1 at 173.501 kb on + strand, within Xcc-8004.180.1 at 173.585 kb on + strand at 173.585 kb on + strand at 173.606 kb on + strand at 173.656 kb on - strand at 173.656 kb on - strand at 173.656 kb on - strand at 173.656 kb on - strand at 173.656 kb on - strand at 173.679 kb on + strand, within Xcc-8004.181.1 at 173.680 kb on - strand, within Xcc-8004.181.1 at 173.680 kb on - strand, within Xcc-8004.181.1 at 173.680 kb on - strand, within Xcc-8004.181.1 at 173.850 kb on + strand, within Xcc-8004.181.1 at 174.037 kb on + strand, within Xcc-8004.181.1 at 174.057 kb on + strand, within Xcc-8004.181.1 at 174.058 kb on - strand, within Xcc-8004.181.1 at 174.058 kb on - strand, within Xcc-8004.181.1 at 174.100 kb on + strand, within Xcc-8004.181.1 at 174.111 kb on + strand, within Xcc-8004.181.1 at 174.132 kb on - strand, within Xcc-8004.181.1 at 174.146 kb on + strand, within Xcc-8004.181.1 at 174.277 kb on + strand at 174.277 kb on + strand at 174.277 kb on + strand at 174.277 kb on + strand at 174.277 kb on + strand at 174.277 kb on + strand at 174.277 kb on + strand at 174.277 kb on + strand at 174.278 kb on - strand at 174.278 kb on - strand at 174.278 kb on - strand at 174.288 kb on - strand at 174.428 kb on + strand at 174.428 kb on + strand at 174.429 kb on - strand at 174.429 kb on - strand at 174.429 kb on - strand at 174.471 kb on + strand, within Xcc-8004.183.1 at 174.471 kb on + strand, within Xcc-8004.183.1 at 174.471 kb on + strand, within Xcc-8004.183.1 at 174.472 kb on - strand, within Xcc-8004.183.1 at 174.472 kb on - strand, within Xcc-8004.183.1 at 174.472 kb on - strand, within Xcc-8004.183.1 at 174.472 kb on - strand, within Xcc-8004.183.1 at 174.472 kb on - strand, within Xcc-8004.183.1 at 174.642 kb on + strand, within Xcc-8004.183.1 at 174.642 kb on + strand, within Xcc-8004.183.1 at 174.642 kb on + strand, within Xcc-8004.183.1 at 174.642 kb on + strand, within Xcc-8004.183.1 at 174.643 kb on - strand, within Xcc-8004.183.1 at 174.796 kb on + strand at 174.796 kb on + strand at 174.797 kb on - strand at 174.812 kb on + strand at 174.831 kb on + strand at 174.831 kb on + strand at 174.831 kb on + strand at 174.831 kb on + strand at 174.831 kb on + strand at 174.831 kb on + strand at 174.832 kb on - strand at 174.832 kb on - strand at 174.832 kb on - strand at 174.832 kb on - strand at 174.837 kb on + strand at 174.838 kb on - strand at 174.883 kb on + strand at 174.884 kb on - strand at 175.044 kb on + strand at 175.044 kb on + strand at 175.044 kb on + strand at 175.044 kb on + strand at 175.045 kb on - strand at 175.045 kb on - strand at 175.045 kb on - strand at 175.121 kb on + strand at 175.121 kb on + strand at 175.121 kb on + strand at 175.121 kb on + strand at 175.121 kb on + strand at 175.121 kb on + strand at 175.121 kb on + strand at 175.122 kb on - strand at 175.122 kb on - strand at 175.122 kb on - strand at 175.122 kb on - strand at 175.122 kb on - strand at 175.125 kb on + strand at 175.125 kb on + strand at 175.125 kb on + strand at 175.125 kb on + strand at 175.125 kb on + strand at 175.125 kb on + strand at 175.125 kb on + strand at 175.126 kb on - strand at 175.126 kb on - strand at 175.126 kb on - strand at 175.126 kb on - strand at 175.126 kb on - strand at 175.126 kb on - strand at 175.126 kb on - strand at 175.126 kb on - strand at 175.126 kb on - strand at 175.126 kb on - strand at 175.126 kb on - strand at 175.126 kb on - strand at 175.394 kb on + strand, within Xcc-8004.184.1 at 175.395 kb on - strand, within Xcc-8004.184.1 at 175.482 kb on + strand, within Xcc-8004.184.1 at 175.483 kb on - strand, within Xcc-8004.184.1 at 175.483 kb on - strand, within Xcc-8004.184.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X remove 173,439 + Xcc-8004.180.1 0.49 -0.1 173,440 - Xcc-8004.180.1 0.49 -0.2 173,440 - Xcc-8004.180.1 0.49 -0.0 173,501 + Xcc-8004.180.1 0.63 -1.2 173,585 + -1.4 173,585 + -0.7 173,606 + -1.0 173,656 - -0.6 173,656 - +1.6 173,656 - -3.3 173,656 - -0.8 173,656 - +1.0 173,679 + Xcc-8004.181.1 0.15 -0.6 173,680 - Xcc-8004.181.1 0.15 -0.9 173,680 - Xcc-8004.181.1 0.15 +0.3 173,680 - Xcc-8004.181.1 0.15 -1.1 173,850 + Xcc-8004.181.1 0.40 -0.5 174,037 + Xcc-8004.181.1 0.68 -0.0 174,057 + Xcc-8004.181.1 0.71 +1.4 174,058 - Xcc-8004.181.1 0.71 +0.6 174,058 - Xcc-8004.181.1 0.71 -0.1 174,100 + Xcc-8004.181.1 0.77 -0.6 174,111 + Xcc-8004.181.1 0.79 -1.2 174,132 - Xcc-8004.181.1 0.82 +0.1 174,146 + Xcc-8004.181.1 0.84 +0.2 174,277 + -0.5 174,277 + +0.7 174,277 + -1.7 174,277 + -0.7 174,277 + -0.4 174,277 + -1.1 174,277 + +0.7 174,277 + +1.2 174,278 - -1.4 174,278 - -0.6 174,278 - -1.8 174,288 - -2.1 174,428 + +0.8 174,428 + -0.2 174,429 - +0.9 174,429 - -1.4 174,429 - -0.3 174,471 + Xcc-8004.183.1 0.10 +0.7 174,471 + Xcc-8004.183.1 0.10 -0.4 174,471 + Xcc-8004.183.1 0.10 +0.5 174,472 - Xcc-8004.183.1 0.11 -1.9 174,472 - Xcc-8004.183.1 0.11 +0.2 174,472 - Xcc-8004.183.1 0.11 -0.2 174,472 - Xcc-8004.183.1 0.11 -2.2 174,472 - Xcc-8004.183.1 0.11 -0.5 174,642 + Xcc-8004.183.1 0.62 +0.4 174,642 + Xcc-8004.183.1 0.62 -0.2 174,642 + Xcc-8004.183.1 0.62 -0.0 174,642 + Xcc-8004.183.1 0.62 -0.6 174,643 - Xcc-8004.183.1 0.62 -0.9 174,796 + +0.4 174,796 + +0.7 174,797 - -0.4 174,812 + -0.2 174,831 + -0.0 174,831 + +0.9 174,831 + +0.4 174,831 + -3.6 174,831 + +0.3 174,831 + -0.0 174,832 - +2.0 174,832 - +0.6 174,832 - -1.1 174,832 - -0.8 174,837 + -0.6 174,838 - -1.0 174,883 + +1.1 174,884 - -0.1 175,044 + -0.8 175,044 + -0.4 175,044 + -0.4 175,044 + +0.1 175,045 - +0.1 175,045 - -0.1 175,045 - -0.2 175,121 + -1.5 175,121 + +1.3 175,121 + -0.6 175,121 + -1.4 175,121 + +1.1 175,121 + +0.6 175,121 + -0.8 175,122 - -0.0 175,122 - -0.5 175,122 - -0.3 175,122 - +0.1 175,122 - -0.4 175,125 + -0.3 175,125 + -2.7 175,125 + +0.2 175,125 + -0.2 175,125 + +0.0 175,125 + -1.1 175,125 + -1.1 175,126 - +0.1 175,126 - +0.8 175,126 - +0.4 175,126 - -0.5 175,126 - +0.4 175,126 - +0.7 175,126 - -1.5 175,126 - +0.3 175,126 - +0.7 175,126 - +0.8 175,126 - +0.1 175,126 - -1.4 175,394 + Xcc-8004.184.1 0.12 -0.2 175,395 - Xcc-8004.184.1 0.12 -0.2 175,482 + Xcc-8004.184.1 0.14 -0.4 175,483 - Xcc-8004.184.1 0.15 +0.2 175,483 - Xcc-8004.184.1 0.15 -0.7
Or see this region's nucleotide sequence