Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1824.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1821.1 and Xcc-8004.1822.1 overlap by 4 nucleotidesXcc-8004.1822.1 and Xcc-8004.1823.1 are separated by 119 nucleotidesXcc-8004.1823.1 and Xcc-8004.1824.1 are separated by 64 nucleotidesXcc-8004.1824.1 and Xcc-8004.1825.1 are separated by 161 nucleotidesXcc-8004.1825.1 and Xcc-8004.1826.1 are separated by 108 nucleotides Xcc-8004.1821.1: Xcc-8004.1821.1 - Transmembrane transport protein, at 1,757,156 to 1,758,385 Xcc-8004.1821.1 Xcc-8004.1822.1: Xcc-8004.1822.1 - Transcriptional regulator, MarR family, at 1,758,382 to 1,758,804 Xcc-8004.1822.1 Xcc-8004.1823.1: Xcc-8004.1823.1 - hypothetical protein, at 1,758,924 to 1,759,100 Xcc-8004.1823.1 Xcc-8004.1824.1: Xcc-8004.1824.1 - Zinc-regulated outer membrane receptor, at 1,759,165 to 1,761,231 Xcc-8004.1824.1 Xcc-8004.1825.1: Xcc-8004.1825.1 - FIG01210006: hypothetical protein, at 1,761,393 to 1,761,809 Xcc-8004.1825.1 Xcc-8004.1826.1: Xcc-8004.1826.1 - FIG01217340: hypothetical protein, at 1,761,918 to 1,762,100 Xcc-8004.1826.1 Position (kb) 1759 1760 1761 1762Strain fitness (log2 ratio) -2 -1 0 1 2at 1758.655 kb on - strand, within Xcc-8004.1822.1at 1758.695 kb on + strand, within Xcc-8004.1822.1at 1758.695 kb on + strand, within Xcc-8004.1822.1at 1758.737 kb on + strand, within Xcc-8004.1822.1at 1758.737 kb on + strand, within Xcc-8004.1822.1at 1758.738 kb on - strand, within Xcc-8004.1822.1at 1758.841 kb on + strandat 1758.850 kb on - strandat 1759.044 kb on - strand, within Xcc-8004.1823.1at 1759.316 kb on + strandat 1759.317 kb on - strandat 1759.317 kb on - strandat 1759.344 kb on - strandat 1759.674 kb on + strand, within Xcc-8004.1824.1at 1759.675 kb on - strand, within Xcc-8004.1824.1at 1759.676 kb on + strand, within Xcc-8004.1824.1at 1759.676 kb on + strand, within Xcc-8004.1824.1at 1759.676 kb on + strand, within Xcc-8004.1824.1at 1759.677 kb on - strand, within Xcc-8004.1824.1at 1759.691 kb on + strand, within Xcc-8004.1824.1at 1759.692 kb on - strand, within Xcc-8004.1824.1at 1759.700 kb on + strand, within Xcc-8004.1824.1at 1759.700 kb on + strand, within Xcc-8004.1824.1at 1759.700 kb on + strand, within Xcc-8004.1824.1at 1759.701 kb on - strand, within Xcc-8004.1824.1at 1759.703 kb on + strand, within Xcc-8004.1824.1at 1759.704 kb on - strand, within Xcc-8004.1824.1at 1759.704 kb on - strand, within Xcc-8004.1824.1at 1759.974 kb on - strand, within Xcc-8004.1824.1at 1759.974 kb on - strand, within Xcc-8004.1824.1at 1759.974 kb on - strand, within Xcc-8004.1824.1at 1759.974 kb on - strand, within Xcc-8004.1824.1at 1759.974 kb on - strand, within Xcc-8004.1824.1at 1760.241 kb on - strand, within Xcc-8004.1824.1at 1760.261 kb on + strand, within Xcc-8004.1824.1at 1760.315 kb on + strand, within Xcc-8004.1824.1at 1760.390 kb on + strand, within Xcc-8004.1824.1at 1760.390 kb on + strand, within Xcc-8004.1824.1at 1760.390 kb on + strand, within Xcc-8004.1824.1at 1760.390 kb on + strand, within Xcc-8004.1824.1at 1760.390 kb on + strand, within Xcc-8004.1824.1at 1760.391 kb on - strand, within Xcc-8004.1824.1at 1760.391 kb on - strand, within Xcc-8004.1824.1at 1760.391 kb on - strand, within Xcc-8004.1824.1at 1760.391 kb on - strand, within Xcc-8004.1824.1at 1760.391 kb on - strand, within Xcc-8004.1824.1at 1760.391 kb on - strand, within Xcc-8004.1824.1at 1760.391 kb on - strand, within Xcc-8004.1824.1at 1760.391 kb on - strand, within Xcc-8004.1824.1at 1760.391 kb on - strand, within Xcc-8004.1824.1at 1760.391 kb on - strand, within Xcc-8004.1824.1at 1760.391 kb on - strand, within Xcc-8004.1824.1at 1760.513 kb on + strand, within Xcc-8004.1824.1at 1760.513 kb on + strand, within Xcc-8004.1824.1at 1760.532 kb on - strand, within Xcc-8004.1824.1at 1760.717 kb on + strand, within Xcc-8004.1824.1at 1760.717 kb on + strand, within Xcc-8004.1824.1at 1761.060 kb on + strandat 1761.247 kb on - strandat 1761.594 kb on + strand, within Xcc-8004.1825.1at 1761.669 kb on + strand, within Xcc-8004.1825.1at 1761.669 kb on + strand, within Xcc-8004.1825.1at 1761.669 kb on + strand, within Xcc-8004.1825.1at 1761.669 kb on + strand, within Xcc-8004.1825.1at 1761.669 kb on + strand, within Xcc-8004.1825.1at 1761.670 kb on - strand, within Xcc-8004.1825.1at 1761.670 kb on - strand, within Xcc-8004.1825.1at 1761.670 kb on - strand, within Xcc-8004.1825.1at 1761.670 kb on - strand, within Xcc-8004.1825.1at 1761.695 kb on - strand, within Xcc-8004.1825.1at 1761.821 kb on + strandat 1761.821 kb on + strandat 1761.821 kb on + strandat 1761.821 kb on + strandat 1761.821 kb on + strandat 1761.821 kb on + strandat 1761.822 kb on - strandat 1761.822 kb on - strandat 1761.822 kb on - strandat 1761.857 kb on + strandat 1761.858 kb on - strandat 1761.894 kb on + strandat 1761.894 kb on + strandat 1761.895 kb on - strandat 1761.895 kb on - strandat 1761.895 kb on - strandat 1761.895 kb on - strandat 1761.895 kb on - strandat 1761.895 kb on - strandat 1761.923 kb on + strandat 1761.924 kb on - strandat 1761.958 kb on - strand, within Xcc-8004.1826.1at 1761.970 kb on - strand, within Xcc-8004.1826.1at 1762.042 kb on + strand, within Xcc-8004.1826.1at 1762.042 kb on + strand, within Xcc-8004.1826.1at 1762.043 kb on - strand, within Xcc-8004.1826.1at 1762.150 kb on + strandat 1762.151 kb on - strandat 1762.151 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
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1,758,655 - Xcc-8004.1822.1 0.65 +0.5
1,758,695 + Xcc-8004.1822.1 0.74 +1.6
1,758,695 + Xcc-8004.1822.1 0.74 -0.7
1,758,737 + Xcc-8004.1822.1 0.84 +0.4
1,758,737 + Xcc-8004.1822.1 0.84 +0.1
1,758,738 - Xcc-8004.1822.1 0.84 +0.9
1,758,841 + -1.6
1,758,850 - -2.1
1,759,044 - Xcc-8004.1823.1 0.68 -0.3
1,759,316 + -1.0
1,759,317 - -0.1
1,759,317 - +0.7
1,759,344 - -1.9
1,759,674 + Xcc-8004.1824.1 0.25 -2.0
1,759,675 - Xcc-8004.1824.1 0.25 +0.0
1,759,676 + Xcc-8004.1824.1 0.25 -1.5
1,759,676 + Xcc-8004.1824.1 0.25 -0.1
1,759,676 + Xcc-8004.1824.1 0.25 -2.1
1,759,677 - Xcc-8004.1824.1 0.25 +0.8
1,759,691 + Xcc-8004.1824.1 0.25 -0.8
1,759,692 - Xcc-8004.1824.1 0.25 -1.0
1,759,700 + Xcc-8004.1824.1 0.26 -1.1
1,759,700 + Xcc-8004.1824.1 0.26 -2.4
1,759,700 + Xcc-8004.1824.1 0.26 -2.4
1,759,701 - Xcc-8004.1824.1 0.26 +0.0
1,759,703 + Xcc-8004.1824.1 0.26 -0.9
1,759,704 - Xcc-8004.1824.1 0.26 -1.3
1,759,704 - Xcc-8004.1824.1 0.26 +0.6
1,759,974 - Xcc-8004.1824.1 0.39 -1.1
1,759,974 - Xcc-8004.1824.1 0.39 +0.0
1,759,974 - Xcc-8004.1824.1 0.39 -2.2
1,759,974 - Xcc-8004.1824.1 0.39 +0.6
1,759,974 - Xcc-8004.1824.1 0.39 -1.9
1,760,241 - Xcc-8004.1824.1 0.52 +0.1
1,760,261 + Xcc-8004.1824.1 0.53 +0.7
1,760,315 + Xcc-8004.1824.1 0.56 -1.2
1,760,390 + Xcc-8004.1824.1 0.59 +0.3
1,760,390 + Xcc-8004.1824.1 0.59 -0.6
1,760,390 + Xcc-8004.1824.1 0.59 +1.0
1,760,390 + Xcc-8004.1824.1 0.59 +0.7
1,760,390 + Xcc-8004.1824.1 0.59 +0.7
1,760,391 - Xcc-8004.1824.1 0.59 -0.2
1,760,391 - Xcc-8004.1824.1 0.59 +0.3
1,760,391 - Xcc-8004.1824.1 0.59 -1.0
1,760,391 - Xcc-8004.1824.1 0.59 -1.7
1,760,391 - Xcc-8004.1824.1 0.59 -2.2
1,760,391 - Xcc-8004.1824.1 0.59 -0.6
1,760,391 - Xcc-8004.1824.1 0.59 -0.6
1,760,391 - Xcc-8004.1824.1 0.59 +0.4
1,760,391 - Xcc-8004.1824.1 0.59 -0.1
1,760,391 - Xcc-8004.1824.1 0.59 +1.2
1,760,391 - Xcc-8004.1824.1 0.59 -2.2
1,760,513 + Xcc-8004.1824.1 0.65 -0.5
1,760,513 + Xcc-8004.1824.1 0.65 -0.6
1,760,532 - Xcc-8004.1824.1 0.66 +0.3
1,760,717 + Xcc-8004.1824.1 0.75 +2.5
1,760,717 + Xcc-8004.1824.1 0.75 +0.9
1,761,060 + -2.0
1,761,247 - -0.6
1,761,594 + Xcc-8004.1825.1 0.48 -0.6
1,761,669 + Xcc-8004.1825.1 0.66 -0.2
1,761,669 + Xcc-8004.1825.1 0.66 -0.5
1,761,669 + Xcc-8004.1825.1 0.66 -1.9
1,761,669 + Xcc-8004.1825.1 0.66 +1.2
1,761,669 + Xcc-8004.1825.1 0.66 -1.2
1,761,670 - Xcc-8004.1825.1 0.66 -0.5
1,761,670 - Xcc-8004.1825.1 0.66 -0.2
1,761,670 - Xcc-8004.1825.1 0.66 -0.4
1,761,670 - Xcc-8004.1825.1 0.66 -0.1
1,761,695 - Xcc-8004.1825.1 0.72 +1.0
1,761,821 + +0.7
1,761,821 + -2.6
1,761,821 + -0.3
1,761,821 + +0.1
1,761,821 + -0.1
1,761,821 + -0.1
1,761,822 - +1.2
1,761,822 - -0.3
1,761,822 - -0.2
1,761,857 + +0.3
1,761,858 - +0.1
1,761,894 + +0.3
1,761,894 + -0.2
1,761,895 - -0.3
1,761,895 - +0.1
1,761,895 - +1.0
1,761,895 - +0.3
1,761,895 - +0.2
1,761,895 - -0.0
1,761,923 + -0.0
1,761,924 - -0.1
1,761,958 - Xcc-8004.1826.1 0.22 -0.8
1,761,970 - Xcc-8004.1826.1 0.28 -0.5
1,762,042 + Xcc-8004.1826.1 0.68 -0.0
1,762,042 + Xcc-8004.1826.1 0.68 +0.7
1,762,043 - Xcc-8004.1826.1 0.68 -0.6
1,762,150 + +0.4
1,762,151 - +0.2
1,762,151 - -0.6

Or see this region's nucleotide sequence