Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.1805.1 and Xcc-8004.1806.1 are separated by 98 nucleotides Xcc-8004.1806.1 and Xcc-8004.1807.1 are separated by 24 nucleotides Xcc-8004.1807.1 and Xcc-8004.1808.1 overlap by 4 nucleotides Xcc-8004.1808.1 and Xcc-8004.1809.1 are separated by 146 nucleotides
Xcc-8004.1805.1: Xcc-8004.1805.1 - Transcriptional regulator, LysR family, at 1,741,641 to 1,742,573
Xcc-8004.1805.1
Xcc-8004.1806.1: Xcc-8004.1806.1 - MFS transporter, at 1,742,672 to 1,743,880
Xcc-8004.1806.1
Xcc-8004.1807.1: Xcc-8004.1807.1 - L-fuco-beta-pyranose dehydrogenase (EC 1.1.1.122), at 1,743,905 to 1,744,150
Xcc-8004.1807.1
Xcc-8004.1808.1: Xcc-8004.1808.1 - L-fuco-beta-pyranose dehydrogenase (EC 1.1.1.122), at 1,744,147 to 1,744,494
Xcc-8004.1808.1
Xcc-8004.1809.1: Xcc-8004.1809.1 - extracellular serine protease, at 1,744,641 to 1,745,030
Xcc-8004.1809.1
Position (kb) 1742
1743
1744 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1741.938 kb on + strand, within Xcc-8004.1805.1 at 1741.938 kb on + strand, within Xcc-8004.1805.1 at 1741.939 kb on - strand, within Xcc-8004.1805.1 at 1742.257 kb on + strand, within Xcc-8004.1805.1 at 1742.257 kb on + strand, within Xcc-8004.1805.1 at 1742.258 kb on - strand, within Xcc-8004.1805.1 at 1742.258 kb on - strand, within Xcc-8004.1805.1 at 1742.258 kb on - strand, within Xcc-8004.1805.1 at 1742.608 kb on + strand at 1742.686 kb on + strand at 1742.686 kb on + strand at 1742.686 kb on + strand at 1742.686 kb on + strand at 1742.686 kb on + strand at 1742.687 kb on - strand at 1742.687 kb on - strand at 1742.687 kb on - strand at 1742.687 kb on - strand at 1742.687 kb on - strand at 1742.941 kb on + strand, within Xcc-8004.1806.1 at 1742.941 kb on + strand, within Xcc-8004.1806.1 at 1742.942 kb on - strand, within Xcc-8004.1806.1 at 1742.942 kb on - strand, within Xcc-8004.1806.1 at 1742.966 kb on + strand, within Xcc-8004.1806.1 at 1742.966 kb on + strand, within Xcc-8004.1806.1 at 1742.967 kb on - strand, within Xcc-8004.1806.1 at 1743.333 kb on - strand, within Xcc-8004.1806.1 at 1743.359 kb on + strand, within Xcc-8004.1806.1 at 1743.359 kb on + strand, within Xcc-8004.1806.1 at 1743.359 kb on + strand, within Xcc-8004.1806.1 at 1743.359 kb on + strand, within Xcc-8004.1806.1 at 1743.359 kb on + strand, within Xcc-8004.1806.1 at 1743.359 kb on + strand, within Xcc-8004.1806.1 at 1743.359 kb on + strand, within Xcc-8004.1806.1 at 1743.359 kb on + strand, within Xcc-8004.1806.1 at 1743.359 kb on + strand, within Xcc-8004.1806.1 at 1743.360 kb on - strand, within Xcc-8004.1806.1 at 1743.360 kb on - strand, within Xcc-8004.1806.1 at 1743.360 kb on - strand, within Xcc-8004.1806.1 at 1743.360 kb on - strand, within Xcc-8004.1806.1 at 1743.360 kb on - strand, within Xcc-8004.1806.1 at 1743.360 kb on - strand, within Xcc-8004.1806.1 at 1743.360 kb on - strand, within Xcc-8004.1806.1 at 1743.362 kb on - strand, within Xcc-8004.1806.1 at 1743.362 kb on - strand, within Xcc-8004.1806.1 at 1743.362 kb on - strand, within Xcc-8004.1806.1 at 1743.685 kb on + strand, within Xcc-8004.1806.1 at 1744.264 kb on + strand, within Xcc-8004.1808.1 at 1744.265 kb on - strand, within Xcc-8004.1808.1 at 1744.265 kb on - strand, within Xcc-8004.1808.1 at 1744.442 kb on + strand, within Xcc-8004.1808.1 at 1744.517 kb on + strand at 1744.518 kb on - strand at 1744.590 kb on - strand at 1744.632 kb on - strand at 1744.632 kb on - strand at 1744.642 kb on + strand at 1744.643 kb on - strand at 1744.643 kb on - strand at 1744.643 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X remove 1,741,938 + Xcc-8004.1805.1 0.32 -0.0 1,741,938 + Xcc-8004.1805.1 0.32 -0.0 1,741,939 - Xcc-8004.1805.1 0.32 -1.9 1,742,257 + Xcc-8004.1805.1 0.66 +0.4 1,742,257 + Xcc-8004.1805.1 0.66 +0.4 1,742,258 - Xcc-8004.1805.1 0.66 -2.4 1,742,258 - Xcc-8004.1805.1 0.66 -0.7 1,742,258 - Xcc-8004.1805.1 0.66 -1.3 1,742,608 + -1.6 1,742,686 + +0.5 1,742,686 + -0.0 1,742,686 + -0.3 1,742,686 + -0.2 1,742,686 + -0.8 1,742,687 - -0.3 1,742,687 - +0.1 1,742,687 - -1.0 1,742,687 - -1.0 1,742,687 - -1.3 1,742,941 + Xcc-8004.1806.1 0.22 -0.7 1,742,941 + Xcc-8004.1806.1 0.22 -2.0 1,742,942 - Xcc-8004.1806.1 0.22 -0.7 1,742,942 - Xcc-8004.1806.1 0.22 -2.3 1,742,966 + Xcc-8004.1806.1 0.24 +0.8 1,742,966 + Xcc-8004.1806.1 0.24 +0.0 1,742,967 - Xcc-8004.1806.1 0.24 +0.0 1,743,333 - Xcc-8004.1806.1 0.55 -0.3 1,743,359 + Xcc-8004.1806.1 0.57 -0.4 1,743,359 + Xcc-8004.1806.1 0.57 -0.5 1,743,359 + Xcc-8004.1806.1 0.57 -1.2 1,743,359 + Xcc-8004.1806.1 0.57 +0.1 1,743,359 + Xcc-8004.1806.1 0.57 +0.8 1,743,359 + Xcc-8004.1806.1 0.57 -0.0 1,743,359 + Xcc-8004.1806.1 0.57 -0.4 1,743,359 + Xcc-8004.1806.1 0.57 -2.0 1,743,359 + Xcc-8004.1806.1 0.57 +0.2 1,743,360 - Xcc-8004.1806.1 0.57 +0.4 1,743,360 - Xcc-8004.1806.1 0.57 +0.0 1,743,360 - Xcc-8004.1806.1 0.57 -0.2 1,743,360 - Xcc-8004.1806.1 0.57 -0.2 1,743,360 - Xcc-8004.1806.1 0.57 -0.1 1,743,360 - Xcc-8004.1806.1 0.57 +0.4 1,743,360 - Xcc-8004.1806.1 0.57 -0.7 1,743,362 - Xcc-8004.1806.1 0.57 -0.8 1,743,362 - Xcc-8004.1806.1 0.57 -0.6 1,743,362 - Xcc-8004.1806.1 0.57 -0.2 1,743,685 + Xcc-8004.1806.1 0.84 -0.4 1,744,264 + Xcc-8004.1808.1 0.34 +0.1 1,744,265 - Xcc-8004.1808.1 0.34 -1.3 1,744,265 - Xcc-8004.1808.1 0.34 +1.0 1,744,442 + Xcc-8004.1808.1 0.85 +0.4 1,744,517 + -0.0 1,744,518 - -2.5 1,744,590 - +0.8 1,744,632 - -2.2 1,744,632 - -0.1 1,744,642 + -0.9 1,744,643 - -0.1 1,744,643 - +0.4 1,744,643 - +2.6
Or see this region's nucleotide sequence