Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1513.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
1,449,659	+				+0.3
1,450,039	+		Xcc-8004.1512.1	0.80	+0.7
1,450,039	+		Xcc-8004.1512.1	0.80	-0.4
1,450,039	+		Xcc-8004.1512.1	0.80	-1.8
1,450,040	-		Xcc-8004.1512.1	0.80	+1.0
1,450,040	-		Xcc-8004.1512.1	0.80	+0.2
1,450,199	+				-0.3
1,450,200	-				+0.2
1,450,566	-		Xcc-8004.1513.1	0.16	+1.8
1,450,602	+		Xcc-8004.1513.1	0.18	-0.7
1,450,634	+		Xcc-8004.1513.1	0.20	+0.9
1,450,682	+		Xcc-8004.1513.1	0.23	-0.1
1,450,683	-		Xcc-8004.1513.1	0.23	+1.3
1,450,788	-		Xcc-8004.1513.1	0.29	+0.8
1,451,112	-		Xcc-8004.1513.1	0.47	+0.8
1,451,132	+		Xcc-8004.1513.1	0.48	+0.2
1,451,259	-		Xcc-8004.1513.1	0.55	-0.4
1,451,259	-		Xcc-8004.1513.1	0.55	+0.4
1,451,534	+		Xcc-8004.1513.1	0.70	+0.0
1,451,534	+		Xcc-8004.1513.1	0.70	+0.4
1,451,551	+		Xcc-8004.1513.1	0.71	-0.3
1,451,612	+		Xcc-8004.1513.1	0.74	-0.7
1,451,612	+		Xcc-8004.1513.1	0.74	-1.3
1,451,612	+		Xcc-8004.1513.1	0.74	-0.2
1,451,612	+		Xcc-8004.1513.1	0.74	-0.4
1,451,697	-		Xcc-8004.1513.1	0.79	-1.3
1,452,004	-				-1.4
1,452,069	+				-0.2
1,452,069	+				-0.4
1,452,069	+				+0.8
1,452,069	+				-0.7
1,452,070	-				-0.2
1,452,070	-				+0.6
1,452,070	-				+0.2
1,452,070	-				+0.3
1,452,089	+				-1.8
1,452,090	-				+0.2
1,452,090	-				-0.8
1,452,459	-				+0.3
1,452,459	-				+1.3