Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.1509.1 and Xcc-8004.1510.1 overlap by 4 nucleotides Xcc-8004.1510.1 and Xcc-8004.1511.1 are separated by 243 nucleotides Xcc-8004.1511.1 and Xcc-8004.1512.1 overlap by 4 nucleotides Xcc-8004.1512.1 and Xcc-8004.1513.1 are separated by 129 nucleotides
Xcc-8004.1509.1: Xcc-8004.1509.1 - hypothetical protein, at 1,446,771 to 1,446,920
Xcc-8004.1509.1
Xcc-8004.1510.1: Xcc-8004.1510.1 - Ribosomal-protein-S5p-alanine acetyltransferase, at 1,446,917 to 1,447,489
Xcc-8004.1510.1
Xcc-8004.1511.1: Xcc-8004.1511.1 - Ribonuclease E (EC 3.1.26.12), at 1,447,733 to 1,449,619
Xcc-8004.1511.1
Xcc-8004.1512.1: Xcc-8004.1512.1 - RNA polymerase sigma-70 factor, at 1,449,616 to 1,450,146
Xcc-8004.1512.1
Xcc-8004.1513.1: Xcc-8004.1513.1 - Von Willebrand factor type A domain protein, at 1,450,276 to 1,452,069
Xcc-8004.1513.1
Position (kb)
1447
1448
1449
1450 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1447.008 kb on - strand, within Xcc-8004.1510.1 at 1447.067 kb on + strand, within Xcc-8004.1510.1 at 1447.067 kb on + strand, within Xcc-8004.1510.1 at 1447.297 kb on - strand, within Xcc-8004.1510.1 at 1447.297 kb on - strand, within Xcc-8004.1510.1 at 1447.334 kb on + strand, within Xcc-8004.1510.1 at 1447.334 kb on + strand, within Xcc-8004.1510.1 at 1447.335 kb on - strand, within Xcc-8004.1510.1 at 1447.409 kb on + strand, within Xcc-8004.1510.1 at 1447.559 kb on + strand at 1447.559 kb on + strand at 1447.559 kb on + strand at 1447.559 kb on + strand at 1447.559 kb on + strand at 1447.560 kb on - strand at 1447.561 kb on + strand at 1447.608 kb on + strand at 1447.609 kb on - strand at 1447.609 kb on - strand at 1447.868 kb on + strand at 1447.868 kb on + strand at 1447.951 kb on + strand, within Xcc-8004.1511.1 at 1448.204 kb on + strand, within Xcc-8004.1511.1 at 1448.535 kb on + strand, within Xcc-8004.1511.1 at 1448.535 kb on + strand, within Xcc-8004.1511.1 at 1448.705 kb on + strand, within Xcc-8004.1511.1 at 1449.659 kb on + strand at 1450.039 kb on + strand, within Xcc-8004.1512.1 at 1450.039 kb on + strand, within Xcc-8004.1512.1 at 1450.039 kb on + strand, within Xcc-8004.1512.1 at 1450.040 kb on - strand, within Xcc-8004.1512.1 at 1450.040 kb on - strand, within Xcc-8004.1512.1 at 1450.199 kb on + strand at 1450.200 kb on - strand at 1450.566 kb on - strand, within Xcc-8004.1513.1 at 1450.602 kb on + strand, within Xcc-8004.1513.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X remove 1,447,008 - Xcc-8004.1510.1 0.16 +0.1 1,447,067 + Xcc-8004.1510.1 0.26 -0.1 1,447,067 + Xcc-8004.1510.1 0.26 -0.5 1,447,297 - Xcc-8004.1510.1 0.66 -0.9 1,447,297 - Xcc-8004.1510.1 0.66 -0.2 1,447,334 + Xcc-8004.1510.1 0.73 -0.7 1,447,334 + Xcc-8004.1510.1 0.73 -2.5 1,447,335 - Xcc-8004.1510.1 0.73 +0.4 1,447,409 + Xcc-8004.1510.1 0.86 -1.3 1,447,559 + -1.2 1,447,559 + -1.0 1,447,559 + -0.9 1,447,559 + +0.7 1,447,559 + +0.2 1,447,560 - -0.3 1,447,561 + -0.5 1,447,608 + +0.2 1,447,609 - -0.2 1,447,609 - -0.2 1,447,868 + -1.3 1,447,868 + +3.0 1,447,951 + Xcc-8004.1511.1 0.12 +0.4 1,448,204 + Xcc-8004.1511.1 0.25 -2.3 1,448,535 + Xcc-8004.1511.1 0.43 -1.4 1,448,535 + Xcc-8004.1511.1 0.43 -1.7 1,448,705 + Xcc-8004.1511.1 0.52 -1.3 1,449,659 + +0.3 1,450,039 + Xcc-8004.1512.1 0.80 +0.7 1,450,039 + Xcc-8004.1512.1 0.80 -0.4 1,450,039 + Xcc-8004.1512.1 0.80 -1.8 1,450,040 - Xcc-8004.1512.1 0.80 +1.0 1,450,040 - Xcc-8004.1512.1 0.80 +0.2 1,450,199 + -0.3 1,450,200 - +0.2 1,450,566 - Xcc-8004.1513.1 0.16 +1.8 1,450,602 + Xcc-8004.1513.1 0.18 -0.7
Or see this region's nucleotide sequence