Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.151.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.149.1 and Xcc-8004.150.1 are separated by 125 nucleotidesXcc-8004.150.1 and Xcc-8004.151.1 are separated by 209 nucleotidesXcc-8004.151.1 and Xcc-8004.153.1 overlap by 4 nucleotides Xcc-8004.149.1: Xcc-8004.149.1 - putative; ORF located using Glimmer/Genemark, at 136,736 to 137,467 Xcc-8004.149.1 Xcc-8004.150.1: Xcc-8004.150.1 - FIG01210552: hypothetical protein, at 137,593 to 137,976 Xcc-8004.150.1 Xcc-8004.151.1: Xcc-8004.151.1 - FIG01211308: hypothetical protein, at 138,186 to 138,569 Xcc-8004.151.1 Xcc-8004.153.1: Xcc-8004.153.1 - Transcriptional regulator, at 138,566 to 141,979 Xcc-8004.153.1 Position (kb) 138 139Strain fitness (log2 ratio) -2 -1 0 1 2 3at 137.330 kb on + strand, within Xcc-8004.149.1at 137.330 kb on + strand, within Xcc-8004.149.1at 137.330 kb on + strand, within Xcc-8004.149.1at 137.330 kb on + strand, within Xcc-8004.149.1at 137.331 kb on - strand, within Xcc-8004.149.1at 137.331 kb on - strand, within Xcc-8004.149.1at 137.331 kb on - strand, within Xcc-8004.149.1at 137.703 kb on + strand, within Xcc-8004.150.1at 137.703 kb on + strand, within Xcc-8004.150.1at 137.703 kb on + strand, within Xcc-8004.150.1at 137.703 kb on + strand, within Xcc-8004.150.1at 137.703 kb on + strand, within Xcc-8004.150.1at 137.703 kb on + strand, within Xcc-8004.150.1at 137.703 kb on + strand, within Xcc-8004.150.1at 137.703 kb on + strand, within Xcc-8004.150.1at 137.703 kb on + strand, within Xcc-8004.150.1at 137.703 kb on + strand, within Xcc-8004.150.1at 137.703 kb on + strand, within Xcc-8004.150.1at 137.704 kb on - strand, within Xcc-8004.150.1at 137.704 kb on - strand, within Xcc-8004.150.1at 137.704 kb on - strand, within Xcc-8004.150.1at 137.704 kb on - strand, within Xcc-8004.150.1at 137.704 kb on - strand, within Xcc-8004.150.1at 137.704 kb on - strand, within Xcc-8004.150.1at 137.704 kb on - strand, within Xcc-8004.150.1at 137.704 kb on - strand, within Xcc-8004.150.1at 137.704 kb on - strand, within Xcc-8004.150.1at 137.704 kb on - strand, within Xcc-8004.150.1at 137.704 kb on - strand, within Xcc-8004.150.1at 138.101 kb on + strandat 138.101 kb on + strandat 138.101 kb on + strandat 138.101 kb on + strandat 138.102 kb on - strandat 138.188 kb on - strandat 138.188 kb on - strandat 138.337 kb on + strand, within Xcc-8004.151.1at 138.337 kb on + strand, within Xcc-8004.151.1at 138.337 kb on + strand, within Xcc-8004.151.1at 138.337 kb on + strand, within Xcc-8004.151.1at 138.337 kb on + strand, within Xcc-8004.151.1at 138.337 kb on + strand, within Xcc-8004.151.1at 138.337 kb on + strand, within Xcc-8004.151.1at 138.338 kb on - strand, within Xcc-8004.151.1at 138.338 kb on - strand, within Xcc-8004.151.1at 138.338 kb on - strand, within Xcc-8004.151.1at 138.424 kb on + strand, within Xcc-8004.151.1at 138.424 kb on + strand, within Xcc-8004.151.1at 138.424 kb on + strand, within Xcc-8004.151.1at 138.424 kb on + strand, within Xcc-8004.151.1at 138.424 kb on + strand, within Xcc-8004.151.1at 138.425 kb on - strand, within Xcc-8004.151.1at 138.425 kb on - strand, within Xcc-8004.151.1at 138.425 kb on - strand, within Xcc-8004.151.1at 138.447 kb on + strand, within Xcc-8004.151.1at 138.448 kb on - strand, within Xcc-8004.151.1at 138.484 kb on + strand, within Xcc-8004.151.1at 138.485 kb on - strand, within Xcc-8004.151.1at 138.485 kb on - strand, within Xcc-8004.151.1at 138.485 kb on - strand, within Xcc-8004.151.1at 138.485 kb on - strand, within Xcc-8004.151.1at 138.485 kb on - strand, within Xcc-8004.151.1at 138.485 kb on - strand, within Xcc-8004.151.1at 138.490 kb on + strand, within Xcc-8004.151.1at 138.490 kb on + strand, within Xcc-8004.151.1at 138.490 kb on + strand, within Xcc-8004.151.1at 138.490 kb on + strand, within Xcc-8004.151.1at 138.490 kb on + strand, within Xcc-8004.151.1at 138.490 kb on + strand, within Xcc-8004.151.1at 138.490 kb on + strand, within Xcc-8004.151.1at 138.490 kb on + strand, within Xcc-8004.151.1at 138.490 kb on + strand, within Xcc-8004.151.1at 138.490 kb on + strand, within Xcc-8004.151.1at 138.490 kb on + strand, within Xcc-8004.151.1at 138.490 kb on + strand, within Xcc-8004.151.1at 138.490 kb on + strand, within Xcc-8004.151.1at 138.490 kb on + strand, within Xcc-8004.151.1at 138.490 kb on + strand, within Xcc-8004.151.1at 138.491 kb on - strand, within Xcc-8004.151.1at 138.491 kb on - strand, within Xcc-8004.151.1at 138.491 kb on - strand, within Xcc-8004.151.1at 138.491 kb on - strand, within Xcc-8004.151.1at 138.491 kb on - strand, within Xcc-8004.151.1at 138.491 kb on - strand, within Xcc-8004.151.1at 138.491 kb on - strand, within Xcc-8004.151.1at 138.491 kb on - strand, within Xcc-8004.151.1at 138.526 kb on + strand, within Xcc-8004.151.1at 138.526 kb on + strand, within Xcc-8004.151.1at 138.526 kb on + strand, within Xcc-8004.151.1at 138.526 kb on + strand, within Xcc-8004.151.1at 138.526 kb on + strand, within Xcc-8004.151.1at 138.526 kb on + strand, within Xcc-8004.151.1at 138.526 kb on + strand, within Xcc-8004.151.1at 138.526 kb on + strand, within Xcc-8004.151.1at 138.526 kb on + strand, within Xcc-8004.151.1at 138.527 kb on - strand, within Xcc-8004.151.1at 138.527 kb on - strand, within Xcc-8004.151.1at 138.527 kb on - strand, within Xcc-8004.151.1at 138.527 kb on - strand, within Xcc-8004.151.1at 138.600 kb on + strandat 138.600 kb on + strandat 138.600 kb on + strandat 138.600 kb on + strandat 138.600 kb on + strandat 138.600 kb on + strandat 138.601 kb on - strandat 138.601 kb on - strandat 138.601 kb on - strandat 138.601 kb on - strandat 138.601 kb on - strandat 138.601 kb on - strandat 138.601 kb on - strandat 138.601 kb on - strandat 138.639 kb on + strandat 138.639 kb on + strandat 138.640 kb on - strandat 138.640 kb on - strandat 138.640 kb on - strandat 138.640 kb on - strandat 138.640 kb on - strandat 138.853 kb on + strandat 139.104 kb on + strand, within Xcc-8004.153.1at 139.104 kb on + strand, within Xcc-8004.153.1at 139.104 kb on + strand, within Xcc-8004.153.1at 139.104 kb on + strand, within Xcc-8004.153.1at 139.104 kb on + strand, within Xcc-8004.153.1at 139.104 kb on + strand, within Xcc-8004.153.1at 139.104 kb on + strand, within Xcc-8004.153.1at 139.105 kb on - strand, within Xcc-8004.153.1at 139.294 kb on + strand, within Xcc-8004.153.1at 139.294 kb on + strand, within Xcc-8004.153.1at 139.332 kb on + strand, within Xcc-8004.153.1at 139.411 kb on - strand, within Xcc-8004.153.1at 139.542 kb on + strand, within Xcc-8004.153.1at 139.542 kb on + strand, within Xcc-8004.153.1at 139.542 kb on + strand, within Xcc-8004.153.1at 139.543 kb on - strand, within Xcc-8004.153.1

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
remove
137,330 + Xcc-8004.149.1 0.81 +1.8
137,330 + Xcc-8004.149.1 0.81 +1.1
137,330 + Xcc-8004.149.1 0.81 -0.8
137,330 + Xcc-8004.149.1 0.81 -0.2
137,331 - Xcc-8004.149.1 0.81 +0.1
137,331 - Xcc-8004.149.1 0.81 +1.2
137,331 - Xcc-8004.149.1 0.81 -0.3
137,703 + Xcc-8004.150.1 0.29 +0.4
137,703 + Xcc-8004.150.1 0.29 -1.0
137,703 + Xcc-8004.150.1 0.29 -0.0
137,703 + Xcc-8004.150.1 0.29 -0.8
137,703 + Xcc-8004.150.1 0.29 -0.2
137,703 + Xcc-8004.150.1 0.29 -1.1
137,703 + Xcc-8004.150.1 0.29 +0.1
137,703 + Xcc-8004.150.1 0.29 -0.5
137,703 + Xcc-8004.150.1 0.29 +0.9
137,703 + Xcc-8004.150.1 0.29 -0.0
137,703 + Xcc-8004.150.1 0.29 -0.2
137,704 - Xcc-8004.150.1 0.29 -0.5
137,704 - Xcc-8004.150.1 0.29 -1.5
137,704 - Xcc-8004.150.1 0.29 +0.3
137,704 - Xcc-8004.150.1 0.29 -0.8
137,704 - Xcc-8004.150.1 0.29 -0.1
137,704 - Xcc-8004.150.1 0.29 -1.4
137,704 - Xcc-8004.150.1 0.29 -0.8
137,704 - Xcc-8004.150.1 0.29 +1.4
137,704 - Xcc-8004.150.1 0.29 -1.1
137,704 - Xcc-8004.150.1 0.29 -1.4
137,704 - Xcc-8004.150.1 0.29 +1.0
138,101 + -0.4
138,101 + -0.3
138,101 + +0.7
138,101 + -0.1
138,102 - +0.9
138,188 - -0.1
138,188 - +2.0
138,337 + Xcc-8004.151.1 0.39 +2.8
138,337 + Xcc-8004.151.1 0.39 +0.3
138,337 + Xcc-8004.151.1 0.39 -0.2
138,337 + Xcc-8004.151.1 0.39 -0.5
138,337 + Xcc-8004.151.1 0.39 +0.2
138,337 + Xcc-8004.151.1 0.39 -0.5
138,337 + Xcc-8004.151.1 0.39 -0.0
138,338 - Xcc-8004.151.1 0.40 +0.1
138,338 - Xcc-8004.151.1 0.40 +0.8
138,338 - Xcc-8004.151.1 0.40 +0.7
138,424 + Xcc-8004.151.1 0.62 -0.5
138,424 + Xcc-8004.151.1 0.62 -0.1
138,424 + Xcc-8004.151.1 0.62 +0.3
138,424 + Xcc-8004.151.1 0.62 +0.6
138,424 + Xcc-8004.151.1 0.62 -1.9
138,425 - Xcc-8004.151.1 0.62 -0.5
138,425 - Xcc-8004.151.1 0.62 +0.6
138,425 - Xcc-8004.151.1 0.62 -0.6
138,447 + Xcc-8004.151.1 0.68 -0.6
138,448 - Xcc-8004.151.1 0.68 +0.2
138,484 + Xcc-8004.151.1 0.78 -0.6
138,485 - Xcc-8004.151.1 0.78 +0.8
138,485 - Xcc-8004.151.1 0.78 +0.5
138,485 - Xcc-8004.151.1 0.78 +0.0
138,485 - Xcc-8004.151.1 0.78 -1.5
138,485 - Xcc-8004.151.1 0.78 -0.4
138,485 - Xcc-8004.151.1 0.78 -0.1
138,490 + Xcc-8004.151.1 0.79 -0.1
138,490 + Xcc-8004.151.1 0.79 +0.5
138,490 + Xcc-8004.151.1 0.79 +0.4
138,490 + Xcc-8004.151.1 0.79 +0.4
138,490 + Xcc-8004.151.1 0.79 -0.1
138,490 + Xcc-8004.151.1 0.79 -1.5
138,490 + Xcc-8004.151.1 0.79 -0.1
138,490 + Xcc-8004.151.1 0.79 +0.2
138,490 + Xcc-8004.151.1 0.79 -0.8
138,490 + Xcc-8004.151.1 0.79 -1.3
138,490 + Xcc-8004.151.1 0.79 -1.1
138,490 + Xcc-8004.151.1 0.79 -0.2
138,490 + Xcc-8004.151.1 0.79 +0.6
138,490 + Xcc-8004.151.1 0.79 -0.0
138,490 + Xcc-8004.151.1 0.79 +0.3
138,491 - Xcc-8004.151.1 0.79 +0.4
138,491 - Xcc-8004.151.1 0.79 +0.6
138,491 - Xcc-8004.151.1 0.79 -0.1
138,491 - Xcc-8004.151.1 0.79 +0.4
138,491 - Xcc-8004.151.1 0.79 -0.8
138,491 - Xcc-8004.151.1 0.79 -0.4
138,491 - Xcc-8004.151.1 0.79 +0.4
138,491 - Xcc-8004.151.1 0.79 -0.9
138,526 + Xcc-8004.151.1 0.89 +1.3
138,526 + Xcc-8004.151.1 0.89 -1.7
138,526 + Xcc-8004.151.1 0.89 -0.9
138,526 + Xcc-8004.151.1 0.89 -0.0
138,526 + Xcc-8004.151.1 0.89 -1.1
138,526 + Xcc-8004.151.1 0.89 +0.5
138,526 + Xcc-8004.151.1 0.89 +0.4
138,526 + Xcc-8004.151.1 0.89 -0.3
138,526 + Xcc-8004.151.1 0.89 -0.6
138,527 - Xcc-8004.151.1 0.89 +0.7
138,527 - Xcc-8004.151.1 0.89 +0.2
138,527 - Xcc-8004.151.1 0.89 -0.4
138,527 - Xcc-8004.151.1 0.89 -0.2
138,600 + -0.3
138,600 + -1.7
138,600 + +1.9
138,600 + +0.5
138,600 + +0.1
138,600 + +0.7
138,601 - -0.3
138,601 - -0.9
138,601 - +1.0
138,601 - +1.2
138,601 - -0.4
138,601 - -0.1
138,601 - -1.2
138,601 - +1.0
138,639 + +0.4
138,639 + -0.5
138,640 - +1.8
138,640 - +0.6
138,640 - +0.2
138,640 - +0.1
138,640 - +0.8
138,853 + +0.1
139,104 + Xcc-8004.153.1 0.16 -0.7
139,104 + Xcc-8004.153.1 0.16 +0.0
139,104 + Xcc-8004.153.1 0.16 +0.4
139,104 + Xcc-8004.153.1 0.16 +0.5
139,104 + Xcc-8004.153.1 0.16 +1.2
139,104 + Xcc-8004.153.1 0.16 +0.4
139,104 + Xcc-8004.153.1 0.16 +0.4
139,105 - Xcc-8004.153.1 0.16 -0.2
139,294 + Xcc-8004.153.1 0.21 +0.8
139,294 + Xcc-8004.153.1 0.21 -0.8
139,332 + Xcc-8004.153.1 0.22 +0.2
139,411 - Xcc-8004.153.1 0.25 +0.0
139,542 + Xcc-8004.153.1 0.29 +0.6
139,542 + Xcc-8004.153.1 0.29 -2.2
139,542 + Xcc-8004.153.1 0.29 +0.2
139,543 - Xcc-8004.153.1 0.29 -1.4

Or see this region's nucleotide sequence