Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1449.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1447.1 and Xcc-8004.1448.1 are separated by 6 nucleotidesXcc-8004.1448.1 and Xcc-8004.1449.1 are separated by 44 nucleotidesXcc-8004.1449.1 and Xcc-8004.1450.1 are separated by 196 nucleotidesXcc-8004.1450.1 and Xcc-8004.1453.1 are separated by 128 nucleotides Xcc-8004.1447.1: Xcc-8004.1447.1 - hypothetical protein, at 1,384,681 to 1,385,199 Xcc-8004.1447.1 Xcc-8004.1448.1: Xcc-8004.1448.1 - TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain, at 1,385,206 to 1,386,024 Xcc-8004.1448.1 Xcc-8004.1449.1: Xcc-8004.1449.1 - Queuosine Biosynthesis QueE Radical SAM, at 1,386,069 to 1,386,752 Xcc-8004.1449.1 Xcc-8004.1450.1: Xcc-8004.1450.1 - Queuosine Biosynthesis QueC ATPase, at 1,386,949 to 1,387,623 Xcc-8004.1450.1 Xcc-8004.1453.1: Xcc-8004.1453.1 - hypothetical protein, at 1,387,752 to 1,388,084 Xcc-8004.1453.1 Position (kb) 1386 1387Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1385.185 kb on + strandat 1385.185 kb on + strandat 1385.185 kb on + strandat 1385.197 kb on + strandat 1385.197 kb on + strandat 1385.197 kb on + strandat 1385.198 kb on - strandat 1385.198 kb on - strandat 1385.266 kb on + strandat 1385.266 kb on + strandat 1385.325 kb on + strand, within Xcc-8004.1448.1at 1385.325 kb on + strand, within Xcc-8004.1448.1at 1385.326 kb on - strand, within Xcc-8004.1448.1at 1385.326 kb on - strand, within Xcc-8004.1448.1at 1385.326 kb on - strand, within Xcc-8004.1448.1at 1385.452 kb on + strand, within Xcc-8004.1448.1at 1385.452 kb on + strand, within Xcc-8004.1448.1at 1385.453 kb on - strand, within Xcc-8004.1448.1at 1385.650 kb on + strand, within Xcc-8004.1448.1at 1385.650 kb on + strand, within Xcc-8004.1448.1at 1385.651 kb on - strand, within Xcc-8004.1448.1at 1385.651 kb on - strand, within Xcc-8004.1448.1at 1385.686 kb on + strand, within Xcc-8004.1448.1at 1385.686 kb on + strand, within Xcc-8004.1448.1at 1385.687 kb on - strand, within Xcc-8004.1448.1at 1385.687 kb on - strand, within Xcc-8004.1448.1at 1385.728 kb on + strand, within Xcc-8004.1448.1at 1385.729 kb on - strand, within Xcc-8004.1448.1at 1385.743 kb on + strand, within Xcc-8004.1448.1at 1385.743 kb on + strand, within Xcc-8004.1448.1at 1385.743 kb on + strand, within Xcc-8004.1448.1at 1385.743 kb on + strand, within Xcc-8004.1448.1at 1385.743 kb on + strand, within Xcc-8004.1448.1at 1385.743 kb on + strand, within Xcc-8004.1448.1at 1385.744 kb on - strand, within Xcc-8004.1448.1at 1385.744 kb on - strand, within Xcc-8004.1448.1at 1385.761 kb on + strand, within Xcc-8004.1448.1at 1385.761 kb on + strand, within Xcc-8004.1448.1at 1385.761 kb on + strand, within Xcc-8004.1448.1at 1385.761 kb on + strand, within Xcc-8004.1448.1at 1385.761 kb on + strand, within Xcc-8004.1448.1at 1385.761 kb on + strand, within Xcc-8004.1448.1at 1385.762 kb on - strand, within Xcc-8004.1448.1at 1385.762 kb on - strand, within Xcc-8004.1448.1at 1385.762 kb on - strand, within Xcc-8004.1448.1at 1385.762 kb on - strand, within Xcc-8004.1448.1at 1385.762 kb on - strand, within Xcc-8004.1448.1at 1385.780 kb on - strand, within Xcc-8004.1448.1at 1385.782 kb on + strand, within Xcc-8004.1448.1at 1385.782 kb on + strand, within Xcc-8004.1448.1at 1385.894 kb on - strand, within Xcc-8004.1448.1at 1385.950 kb on + strandat 1385.951 kb on - strandat 1386.059 kb on + strandat 1386.059 kb on + strandat 1386.059 kb on + strandat 1386.060 kb on - strandat 1386.060 kb on - strandat 1386.222 kb on + strand, within Xcc-8004.1449.1at 1386.222 kb on + strand, within Xcc-8004.1449.1at 1386.222 kb on + strand, within Xcc-8004.1449.1at 1386.222 kb on + strand, within Xcc-8004.1449.1at 1386.222 kb on + strand, within Xcc-8004.1449.1at 1386.223 kb on - strand, within Xcc-8004.1449.1at 1386.238 kb on - strand, within Xcc-8004.1449.1at 1386.567 kb on + strand, within Xcc-8004.1449.1at 1386.875 kb on + strandat 1386.912 kb on - strandat 1386.912 kb on - strandat 1386.933 kb on + strandat 1386.933 kb on + strandat 1386.933 kb on + strandat 1386.933 kb on + strandat 1386.934 kb on - strandat 1387.051 kb on + strand, within Xcc-8004.1450.1at 1387.065 kb on + strand, within Xcc-8004.1450.1at 1387.066 kb on - strand, within Xcc-8004.1450.1at 1387.066 kb on - strand, within Xcc-8004.1450.1at 1387.219 kb on + strand, within Xcc-8004.1450.1at 1387.219 kb on + strand, within Xcc-8004.1450.1at 1387.219 kb on + strand, within Xcc-8004.1450.1at 1387.220 kb on - strand, within Xcc-8004.1450.1at 1387.220 kb on - strand, within Xcc-8004.1450.1at 1387.220 kb on - strand, within Xcc-8004.1450.1at 1387.220 kb on - strand, within Xcc-8004.1450.1at 1387.220 kb on - strand, within Xcc-8004.1450.1at 1387.220 kb on - strand, within Xcc-8004.1450.1at 1387.220 kb on - strand, within Xcc-8004.1450.1at 1387.220 kb on - strand, within Xcc-8004.1450.1at 1387.507 kb on + strand, within Xcc-8004.1450.1at 1387.508 kb on - strand, within Xcc-8004.1450.1at 1387.632 kb on + strandat 1387.632 kb on + strandat 1387.632 kb on + strandat 1387.632 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
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1,385,185 + -1.3
1,385,185 + -0.6
1,385,185 + -0.3
1,385,197 + -2.3
1,385,197 + -2.0
1,385,197 + -2.1
1,385,198 - -0.9
1,385,198 - -0.7
1,385,266 + +0.3
1,385,266 + -0.1
1,385,325 + Xcc-8004.1448.1 0.15 -0.0
1,385,325 + Xcc-8004.1448.1 0.15 -2.5
1,385,326 - Xcc-8004.1448.1 0.15 -0.8
1,385,326 - Xcc-8004.1448.1 0.15 -2.7
1,385,326 - Xcc-8004.1448.1 0.15 +0.5
1,385,452 + Xcc-8004.1448.1 0.30 +0.1
1,385,452 + Xcc-8004.1448.1 0.30 -0.0
1,385,453 - Xcc-8004.1448.1 0.30 -2.9
1,385,650 + Xcc-8004.1448.1 0.54 -0.3
1,385,650 + Xcc-8004.1448.1 0.54 -0.4
1,385,651 - Xcc-8004.1448.1 0.54 +0.7
1,385,651 - Xcc-8004.1448.1 0.54 +0.6
1,385,686 + Xcc-8004.1448.1 0.59 +0.6
1,385,686 + Xcc-8004.1448.1 0.59 -2.0
1,385,687 - Xcc-8004.1448.1 0.59 -0.7
1,385,687 - Xcc-8004.1448.1 0.59 -0.7
1,385,728 + Xcc-8004.1448.1 0.64 -0.1
1,385,729 - Xcc-8004.1448.1 0.64 +0.7
1,385,743 + Xcc-8004.1448.1 0.66 -0.8
1,385,743 + Xcc-8004.1448.1 0.66 +0.4
1,385,743 + Xcc-8004.1448.1 0.66 -1.3
1,385,743 + Xcc-8004.1448.1 0.66 -0.3
1,385,743 + Xcc-8004.1448.1 0.66 -0.8
1,385,743 + Xcc-8004.1448.1 0.66 -1.5
1,385,744 - Xcc-8004.1448.1 0.66 -0.5
1,385,744 - Xcc-8004.1448.1 0.66 -0.7
1,385,761 + Xcc-8004.1448.1 0.68 +1.9
1,385,761 + Xcc-8004.1448.1 0.68 +0.7
1,385,761 + Xcc-8004.1448.1 0.68 +0.3
1,385,761 + Xcc-8004.1448.1 0.68 -1.3
1,385,761 + Xcc-8004.1448.1 0.68 -1.7
1,385,761 + Xcc-8004.1448.1 0.68 -1.5
1,385,762 - Xcc-8004.1448.1 0.68 -0.6
1,385,762 - Xcc-8004.1448.1 0.68 +0.0
1,385,762 - Xcc-8004.1448.1 0.68 +0.3
1,385,762 - Xcc-8004.1448.1 0.68 -0.2
1,385,762 - Xcc-8004.1448.1 0.68 -1.1
1,385,780 - Xcc-8004.1448.1 0.70 -0.9
1,385,782 + Xcc-8004.1448.1 0.70 -1.3
1,385,782 + Xcc-8004.1448.1 0.70 -0.5
1,385,894 - Xcc-8004.1448.1 0.84 -0.9
1,385,950 + +0.8
1,385,951 - -0.7
1,386,059 + -0.2
1,386,059 + +0.0
1,386,059 + -1.8
1,386,060 - -2.1
1,386,060 - -0.7
1,386,222 + Xcc-8004.1449.1 0.22 +0.3
1,386,222 + Xcc-8004.1449.1 0.22 +1.6
1,386,222 + Xcc-8004.1449.1 0.22 +0.3
1,386,222 + Xcc-8004.1449.1 0.22 +0.1
1,386,222 + Xcc-8004.1449.1 0.22 -0.6
1,386,223 - Xcc-8004.1449.1 0.23 +1.1
1,386,238 - Xcc-8004.1449.1 0.25 -1.4
1,386,567 + Xcc-8004.1449.1 0.73 -0.8
1,386,875 + -0.8
1,386,912 - +0.3
1,386,912 - -0.4
1,386,933 + -0.1
1,386,933 + -0.2
1,386,933 + -2.7
1,386,933 + -1.2
1,386,934 - +0.7
1,387,051 + Xcc-8004.1450.1 0.15 -0.8
1,387,065 + Xcc-8004.1450.1 0.17 -1.1
1,387,066 - Xcc-8004.1450.1 0.17 -2.3
1,387,066 - Xcc-8004.1450.1 0.17 -0.5
1,387,219 + Xcc-8004.1450.1 0.40 -0.6
1,387,219 + Xcc-8004.1450.1 0.40 -0.7
1,387,219 + Xcc-8004.1450.1 0.40 +0.1
1,387,220 - Xcc-8004.1450.1 0.40 -1.2
1,387,220 - Xcc-8004.1450.1 0.40 -1.2
1,387,220 - Xcc-8004.1450.1 0.40 -0.3
1,387,220 - Xcc-8004.1450.1 0.40 -1.7
1,387,220 - Xcc-8004.1450.1 0.40 -1.5
1,387,220 - Xcc-8004.1450.1 0.40 +0.5
1,387,220 - Xcc-8004.1450.1 0.40 +0.3
1,387,220 - Xcc-8004.1450.1 0.40 +0.2
1,387,507 + Xcc-8004.1450.1 0.83 -0.3
1,387,508 - Xcc-8004.1450.1 0.83 +1.0
1,387,632 + +1.0
1,387,632 + +1.2
1,387,632 + +0.4
1,387,632 + -0.8

Or see this region's nucleotide sequence