Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1440.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
1,379,255	+		Xcc-8004.1439.1	0.12	-0.3
1,379,255	+		Xcc-8004.1439.1	0.12	+3.0
1,379,256	-		Xcc-8004.1439.1	0.12	-0.8
1,380,099	-				+0.0
1,380,099	-				+0.5
1,380,099	-				+0.2
1,380,184	-				-0.3
1,380,184	-				+0.1
1,380,207	+				+0.6
1,380,207	+				-1.0
1,380,207	+				+0.4
1,380,265	+				+0.0
1,380,265	+				+1.7
1,380,265	+				+0.2
1,380,265	+				-0.7
1,380,266	-				-0.6
1,380,266	-				-0.5
1,380,266	-				-1.1
1,380,299	+		Xcc-8004.1440.1	0.17	+0.4
1,380,299	+		Xcc-8004.1440.1	0.17	+1.0
1,380,299	+		Xcc-8004.1440.1	0.17	-0.3
1,380,299	+		Xcc-8004.1440.1	0.17	-0.7
1,380,299	+		Xcc-8004.1440.1	0.17	-0.2
1,380,333	+		Xcc-8004.1440.1	0.24	+0.6
1,380,333	+		Xcc-8004.1440.1	0.24	+0.1
1,380,333	+		Xcc-8004.1440.1	0.24	-1.2
1,380,333	+		Xcc-8004.1440.1	0.24	-0.1
1,380,333	+		Xcc-8004.1440.1	0.24	-0.2
1,380,333	+		Xcc-8004.1440.1	0.24	-0.8
1,380,526	+		Xcc-8004.1440.1	0.66	+0.1
1,380,526	+		Xcc-8004.1440.1	0.66	-0.2
1,380,526	+		Xcc-8004.1440.1	0.66	+2.3
1,380,655	+				+0.0
1,380,655	+				+0.7
1,380,675	+				-0.5
1,380,678	+				+0.0
1,380,678	+				+0.0
1,380,678	+				-1.3
1,380,678	+				+0.7
1,381,469	+				-1.4
1,381,469	+				+0.5
1,381,469	+				+0.0
1,381,470	-				+1.3
1,381,548	+				-0.4
1,381,548	+				+2.2