Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1439.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1438.1 and Xcc-8004.1439.1 are separated by 39 nucleotidesXcc-8004.1439.1 and Xcc-8004.1440.1 are separated by 52 nucleotidesXcc-8004.1440.1 and Xcc-8004.1441.1 are separated by 11 nucleotides Xcc-8004.1438.1: Xcc-8004.1438.1 - FIG01214064: hypothetical protein, at 1,377,968 to 1,379,089 Xcc-8004.1438.1 Xcc-8004.1439.1: Xcc-8004.1439.1 - Holliday junction DNA helicase RuvB, at 1,379,129 to 1,380,169 Xcc-8004.1439.1 Xcc-8004.1440.1: Xcc-8004.1440.1 - 4-hydroxybenzoyl-CoA thioesterase family active site, at 1,380,222 to 1,380,680 Xcc-8004.1440.1 Xcc-8004.1441.1: Xcc-8004.1441.1 - MotA/TolQ/ExbB proton channel family protein, at 1,380,692 to 1,381,471 Xcc-8004.1441.1 Position (kb) 1379 1380 1381Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1378.136 kb on + strand, within Xcc-8004.1438.1at 1378.230 kb on + strand, within Xcc-8004.1438.1at 1378.231 kb on - strand, within Xcc-8004.1438.1at 1378.283 kb on + strand, within Xcc-8004.1438.1at 1378.283 kb on + strand, within Xcc-8004.1438.1at 1378.284 kb on - strand, within Xcc-8004.1438.1at 1378.284 kb on - strand, within Xcc-8004.1438.1at 1378.388 kb on + strand, within Xcc-8004.1438.1at 1378.388 kb on + strand, within Xcc-8004.1438.1at 1378.389 kb on - strand, within Xcc-8004.1438.1at 1378.389 kb on - strand, within Xcc-8004.1438.1at 1378.389 kb on - strand, within Xcc-8004.1438.1at 1378.389 kb on - strand, within Xcc-8004.1438.1at 1378.421 kb on + strand, within Xcc-8004.1438.1at 1378.421 kb on + strand, within Xcc-8004.1438.1at 1378.421 kb on + strand, within Xcc-8004.1438.1at 1378.421 kb on + strand, within Xcc-8004.1438.1at 1378.422 kb on - strand, within Xcc-8004.1438.1at 1378.422 kb on - strand, within Xcc-8004.1438.1at 1378.530 kb on - strand, within Xcc-8004.1438.1at 1378.530 kb on - strand, within Xcc-8004.1438.1at 1378.697 kb on + strand, within Xcc-8004.1438.1at 1378.697 kb on + strand, within Xcc-8004.1438.1at 1378.697 kb on + strand, within Xcc-8004.1438.1at 1378.697 kb on + strand, within Xcc-8004.1438.1at 1378.721 kb on - strand, within Xcc-8004.1438.1at 1378.766 kb on + strand, within Xcc-8004.1438.1at 1378.767 kb on - strand, within Xcc-8004.1438.1at 1378.799 kb on + strand, within Xcc-8004.1438.1at 1378.799 kb on + strand, within Xcc-8004.1438.1at 1378.799 kb on + strand, within Xcc-8004.1438.1at 1378.800 kb on - strand, within Xcc-8004.1438.1at 1378.800 kb on - strand, within Xcc-8004.1438.1at 1378.800 kb on - strand, within Xcc-8004.1438.1at 1378.800 kb on - strand, within Xcc-8004.1438.1at 1378.800 kb on - strand, within Xcc-8004.1438.1at 1378.803 kb on + strand, within Xcc-8004.1438.1at 1378.804 kb on - strand, within Xcc-8004.1438.1at 1378.804 kb on - strand, within Xcc-8004.1438.1at 1378.883 kb on + strand, within Xcc-8004.1438.1at 1378.883 kb on + strand, within Xcc-8004.1438.1at 1378.883 kb on + strand, within Xcc-8004.1438.1at 1378.883 kb on + strand, within Xcc-8004.1438.1at 1378.884 kb on - strand, within Xcc-8004.1438.1at 1378.884 kb on - strand, within Xcc-8004.1438.1at 1378.884 kb on - strand, within Xcc-8004.1438.1at 1378.884 kb on - strand, within Xcc-8004.1438.1at 1378.884 kb on - strand, within Xcc-8004.1438.1at 1378.884 kb on - strand, within Xcc-8004.1438.1at 1378.884 kb on - strand, within Xcc-8004.1438.1at 1378.884 kb on - strand, within Xcc-8004.1438.1at 1378.976 kb on + strand, within Xcc-8004.1438.1at 1378.976 kb on + strand, within Xcc-8004.1438.1at 1378.976 kb on + strand, within Xcc-8004.1438.1at 1378.976 kb on + strand, within Xcc-8004.1438.1at 1378.977 kb on - strandat 1378.994 kb on + strandat 1378.995 kb on - strandat 1378.995 kb on - strandat 1378.995 kb on - strandat 1379.087 kb on + strandat 1379.087 kb on + strandat 1379.088 kb on - strandat 1379.088 kb on - strandat 1379.216 kb on + strandat 1379.255 kb on + strand, within Xcc-8004.1439.1at 1379.255 kb on + strand, within Xcc-8004.1439.1at 1379.256 kb on - strand, within Xcc-8004.1439.1at 1380.099 kb on - strandat 1380.099 kb on - strandat 1380.099 kb on - strandat 1380.184 kb on - strandat 1380.184 kb on - strandat 1380.207 kb on + strandat 1380.207 kb on + strandat 1380.207 kb on + strandat 1380.265 kb on + strandat 1380.265 kb on + strandat 1380.265 kb on + strandat 1380.265 kb on + strandat 1380.266 kb on - strandat 1380.266 kb on - strandat 1380.266 kb on - strandat 1380.299 kb on + strand, within Xcc-8004.1440.1at 1380.299 kb on + strand, within Xcc-8004.1440.1at 1380.299 kb on + strand, within Xcc-8004.1440.1at 1380.299 kb on + strand, within Xcc-8004.1440.1at 1380.299 kb on + strand, within Xcc-8004.1440.1at 1380.333 kb on + strand, within Xcc-8004.1440.1at 1380.333 kb on + strand, within Xcc-8004.1440.1at 1380.333 kb on + strand, within Xcc-8004.1440.1at 1380.333 kb on + strand, within Xcc-8004.1440.1at 1380.333 kb on + strand, within Xcc-8004.1440.1at 1380.333 kb on + strand, within Xcc-8004.1440.1at 1380.526 kb on + strand, within Xcc-8004.1440.1at 1380.526 kb on + strand, within Xcc-8004.1440.1at 1380.526 kb on + strand, within Xcc-8004.1440.1at 1380.655 kb on + strandat 1380.655 kb on + strandat 1380.675 kb on + strandat 1380.678 kb on + strandat 1380.678 kb on + strandat 1380.678 kb on + strandat 1380.678 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
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1,378,136 + Xcc-8004.1438.1 0.15 +0.5
1,378,230 + Xcc-8004.1438.1 0.23 -0.0
1,378,231 - Xcc-8004.1438.1 0.23 +0.0
1,378,283 + Xcc-8004.1438.1 0.28 +1.3
1,378,283 + Xcc-8004.1438.1 0.28 +0.3
1,378,284 - Xcc-8004.1438.1 0.28 -0.8
1,378,284 - Xcc-8004.1438.1 0.28 +1.2
1,378,388 + Xcc-8004.1438.1 0.37 +1.2
1,378,388 + Xcc-8004.1438.1 0.37 +0.7
1,378,389 - Xcc-8004.1438.1 0.38 +0.0
1,378,389 - Xcc-8004.1438.1 0.38 -0.3
1,378,389 - Xcc-8004.1438.1 0.38 -1.3
1,378,389 - Xcc-8004.1438.1 0.38 -2.0
1,378,421 + Xcc-8004.1438.1 0.40 +1.0
1,378,421 + Xcc-8004.1438.1 0.40 -0.4
1,378,421 + Xcc-8004.1438.1 0.40 +0.5
1,378,421 + Xcc-8004.1438.1 0.40 -0.2
1,378,422 - Xcc-8004.1438.1 0.40 +0.1
1,378,422 - Xcc-8004.1438.1 0.40 +0.3
1,378,530 - Xcc-8004.1438.1 0.50 -0.6
1,378,530 - Xcc-8004.1438.1 0.50 +0.2
1,378,697 + Xcc-8004.1438.1 0.65 -0.6
1,378,697 + Xcc-8004.1438.1 0.65 -1.3
1,378,697 + Xcc-8004.1438.1 0.65 +0.9
1,378,697 + Xcc-8004.1438.1 0.65 +0.3
1,378,721 - Xcc-8004.1438.1 0.67 -0.3
1,378,766 + Xcc-8004.1438.1 0.71 +1.5
1,378,767 - Xcc-8004.1438.1 0.71 +0.4
1,378,799 + Xcc-8004.1438.1 0.74 -0.8
1,378,799 + Xcc-8004.1438.1 0.74 +0.3
1,378,799 + Xcc-8004.1438.1 0.74 +1.1
1,378,800 - Xcc-8004.1438.1 0.74 +0.2
1,378,800 - Xcc-8004.1438.1 0.74 +1.6
1,378,800 - Xcc-8004.1438.1 0.74 +0.6
1,378,800 - Xcc-8004.1438.1 0.74 +0.6
1,378,800 - Xcc-8004.1438.1 0.74 -1.0
1,378,803 + Xcc-8004.1438.1 0.74 -0.5
1,378,804 - Xcc-8004.1438.1 0.75 -0.4
1,378,804 - Xcc-8004.1438.1 0.75 +0.5
1,378,883 + Xcc-8004.1438.1 0.82 -0.1
1,378,883 + Xcc-8004.1438.1 0.82 +0.1
1,378,883 + Xcc-8004.1438.1 0.82 +0.4
1,378,883 + Xcc-8004.1438.1 0.82 -0.1
1,378,884 - Xcc-8004.1438.1 0.82 +0.2
1,378,884 - Xcc-8004.1438.1 0.82 +0.1
1,378,884 - Xcc-8004.1438.1 0.82 -1.5
1,378,884 - Xcc-8004.1438.1 0.82 +0.6
1,378,884 - Xcc-8004.1438.1 0.82 +0.3
1,378,884 - Xcc-8004.1438.1 0.82 +1.3
1,378,884 - Xcc-8004.1438.1 0.82 -0.5
1,378,884 - Xcc-8004.1438.1 0.82 +0.5
1,378,976 + Xcc-8004.1438.1 0.90 -0.4
1,378,976 + Xcc-8004.1438.1 0.90 +0.6
1,378,976 + Xcc-8004.1438.1 0.90 -0.7
1,378,976 + Xcc-8004.1438.1 0.90 -0.3
1,378,977 - -0.4
1,378,994 + +0.2
1,378,995 - +0.0
1,378,995 - +0.5
1,378,995 - +0.1
1,379,087 + +0.4
1,379,087 + -0.3
1,379,088 - -0.1
1,379,088 - -0.5
1,379,216 + +1.7
1,379,255 + Xcc-8004.1439.1 0.12 -0.3
1,379,255 + Xcc-8004.1439.1 0.12 +3.0
1,379,256 - Xcc-8004.1439.1 0.12 -0.8
1,380,099 - +0.0
1,380,099 - +0.5
1,380,099 - +0.2
1,380,184 - -0.3
1,380,184 - +0.1
1,380,207 + +0.6
1,380,207 + -1.0
1,380,207 + +0.4
1,380,265 + +0.0
1,380,265 + +1.7
1,380,265 + +0.2
1,380,265 + -0.7
1,380,266 - -0.6
1,380,266 - -0.5
1,380,266 - -1.1
1,380,299 + Xcc-8004.1440.1 0.17 +0.4
1,380,299 + Xcc-8004.1440.1 0.17 +1.0
1,380,299 + Xcc-8004.1440.1 0.17 -0.3
1,380,299 + Xcc-8004.1440.1 0.17 -0.7
1,380,299 + Xcc-8004.1440.1 0.17 -0.2
1,380,333 + Xcc-8004.1440.1 0.24 +0.6
1,380,333 + Xcc-8004.1440.1 0.24 +0.1
1,380,333 + Xcc-8004.1440.1 0.24 -1.2
1,380,333 + Xcc-8004.1440.1 0.24 -0.1
1,380,333 + Xcc-8004.1440.1 0.24 -0.2
1,380,333 + Xcc-8004.1440.1 0.24 -0.8
1,380,526 + Xcc-8004.1440.1 0.66 +0.1
1,380,526 + Xcc-8004.1440.1 0.66 -0.2
1,380,526 + Xcc-8004.1440.1 0.66 +2.3
1,380,655 + +0.0
1,380,655 + +0.7
1,380,675 + -0.5
1,380,678 + +0.0
1,380,678 + +0.0
1,380,678 + -1.3
1,380,678 + +0.7

Or see this region's nucleotide sequence