Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1431.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
1,369,322	+				-0.1
1,369,322	+				-0.6
1,369,323	-				-0.1
1,369,323	-				-0.1
1,369,323	-				+1.6
1,369,323	-				+0.6
1,369,323	-				+0.2
1,369,477	+		Xcc-8004.1430.1	0.17	+0.6
1,369,537	+		Xcc-8004.1430.1	0.25	-0.6
1,369,537	+		Xcc-8004.1430.1	0.25	+0.4
1,369,537	+		Xcc-8004.1430.1	0.25	+0.4
1,369,538	-		Xcc-8004.1430.1	0.25	-0.8
1,369,538	-		Xcc-8004.1430.1	0.25	+1.2
1,369,538	-		Xcc-8004.1430.1	0.25	-0.7
1,369,538	-		Xcc-8004.1430.1	0.25	+1.0
1,369,538	-		Xcc-8004.1430.1	0.25	-0.5
1,369,538	-		Xcc-8004.1430.1	0.25	-1.5
1,369,538	-		Xcc-8004.1430.1	0.25	-0.1
1,369,570	+		Xcc-8004.1430.1	0.29	+0.1
1,369,570	+		Xcc-8004.1430.1	0.29	-1.0
1,369,571	-		Xcc-8004.1430.1	0.29	-0.0
1,369,901	+		Xcc-8004.1430.1	0.72	-1.1
1,369,901	+		Xcc-8004.1430.1	0.72	+2.0
1,369,901	+		Xcc-8004.1430.1	0.72	-0.4
1,369,901	+		Xcc-8004.1430.1	0.72	+0.3
1,369,967	+		Xcc-8004.1430.1	0.80	-0.7
1,370,133	+				+0.7
1,370,135	+				-2.6
1,370,135	+				-1.3
1,370,135	+				+1.4
1,370,135	+				+0.9
1,370,136	-				-0.0
1,370,155	+				-0.9
1,370,156	-				-0.4
1,370,176	-				-0.3
1,370,176	-				-0.7
1,372,133	+				-0.1
1,372,133	+				-0.9
1,372,134	-				+0.1
1,372,521	+		Xcc-8004.1432.1	0.24	+0.4
1,372,521	+		Xcc-8004.1432.1	0.24	-0.7
1,372,521	+		Xcc-8004.1432.1	0.24	+0.5
1,372,522	-		Xcc-8004.1432.1	0.25	+1.8
1,372,522	-		Xcc-8004.1432.1	0.25	-0.5
1,372,522	-		Xcc-8004.1432.1	0.25	+0.0
1,372,677	+		Xcc-8004.1432.1	0.54	-1.5
1,372,678	-		Xcc-8004.1432.1	0.54	+0.8
1,372,678	-		Xcc-8004.1432.1	0.54	-0.3
1,372,692	+		Xcc-8004.1432.1	0.57	+0.6
1,372,692	+		Xcc-8004.1432.1	0.57	-0.1
1,372,692	+		Xcc-8004.1432.1	0.57	-0.4
1,372,692	+		Xcc-8004.1432.1	0.57	-0.2
1,372,692	+		Xcc-8004.1432.1	0.57	-1.1
1,372,693	-		Xcc-8004.1432.1	0.57	-0.6
1,372,812	+		Xcc-8004.1432.1	0.80	-0.4
1,372,812	+		Xcc-8004.1432.1	0.80	-2.5
1,372,812	+		Xcc-8004.1432.1	0.80	-1.1
1,372,813	-		Xcc-8004.1432.1	0.80	+0.3
1,372,813	-		Xcc-8004.1432.1	0.80	-0.2
1,372,813	-		Xcc-8004.1432.1	0.80	+0.4
1,372,813	-		Xcc-8004.1432.1	0.80	+0.7
1,372,813	-		Xcc-8004.1432.1	0.80	-0.2
1,372,813	-		Xcc-8004.1432.1	0.80	-1.4
1,372,822	-		Xcc-8004.1432.1	0.81	+0.1
1,372,822	-		Xcc-8004.1432.1	0.81	+0.3
1,372,881	+				+0.0
1,372,881	+				+0.6
1,372,881	+				-1.3
1,372,881	+				-0.3
1,372,881	+				+0.4
1,372,881	+				-1.2
1,372,881	+				+0.4
1,372,882	-				+1.4
1,372,882	-				-0.2
1,372,882	-				-0.1
1,372,917	+				-1.2
1,372,917	+				+1.6
1,372,917	+				+0.0
1,372,918	-				+2.6