Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1427.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
1,367,252	+				+0.2
1,367,252	+				-2.8
1,367,253	-				-0.2
1,367,253	-				-0.1
1,367,367	+				+0.6
1,367,367	+				+1.2
1,367,367	+				+0.3
1,367,367	+				-0.7
1,367,367	+				-2.1
1,367,367	+				+0.3
1,367,367	+				-0.5
1,367,367	+				-2.3
1,367,367	+				-0.3
1,367,367	+				-0.4
1,367,367	+				+0.2
1,367,368	-				-1.1
1,367,368	-				+1.0
1,367,368	-				-0.1
1,367,368	-				-1.4
1,367,368	-				-1.2
1,367,368	-				+0.4
1,367,368	-				-0.4
1,367,411	+				-0.2
1,367,412	-				-0.1
1,367,460	+				+0.0
1,367,460	+				-0.3
1,367,488	+				-2.0
1,367,488	+				+0.1
1,367,489	-				+1.0
1,367,489	-				+0.1
1,367,489	-				+0.4
1,367,489	-				+0.2
1,367,500	-				-0.5
1,367,500	-				-0.5
1,367,514	-				-0.8
1,367,581	+				-0.2
1,367,581	+				+0.6
1,367,581	+				+0.3
1,367,582	-				+1.2
1,367,582	-				+0.0
1,367,601	+				+0.3
1,367,601	+				+0.5
1,367,601	+				-0.2
1,367,601	+				+0.6
1,367,601	+				-1.6
1,367,601	+				+2.3
1,367,602	-				-1.0
1,367,602	-				-0.7
1,367,602	-				+0.9
1,367,602	-				+0.3
1,367,602	-				+0.7
1,367,602	-				-1.3
1,367,602	-				+0.0
1,367,602	-				+0.4
1,367,602	-				-1.5
1,367,602	-				-1.4
1,367,605	+				-2.7
1,367,605	+				-0.6
1,367,606	-				+1.4
1,367,606	-				-0.7
1,367,606	-				-0.5
1,367,606	-				-0.5
1,367,606	-				-1.8
1,367,606	-				+0.6
1,367,606	-				-0.2
1,367,714	+				-0.3
1,367,714	+				-0.1
1,367,714	+				+0.3
1,367,714	+				-0.2
1,367,714	+				-0.7
1,367,714	+				-0.6
1,367,714	+				+0.0
1,367,715	-				-0.9
1,367,715	-				+0.4
1,367,715	-				+0.0
1,367,715	-				+0.7
1,367,769	-				+0.6
1,368,057	+				+0.6
1,368,058	-				+0.6
1,368,102	+				+0.5
1,368,102	+				-0.4
1,368,102	+				-1.6
1,368,102	+				-0.1
1,368,103	-				+1.6
1,368,103	-				-0.3
1,368,103	-				+1.0
1,368,103	-				-0.1
1,368,106	+				-0.5
1,368,106	+				+0.1
1,368,106	+				+2.0
1,368,106	+				-0.8
1,368,106	+				+0.9
1,368,106	+				+0.5
1,368,106	+				-1.5
1,368,106	+				+1.4
1,368,107	-				+0.3
1,368,107	-				+0.1
1,368,107	-				-0.1
1,368,107	-				+0.1
1,368,256	+		Xcc-8004.1427.1	0.53	-2.0
1,368,309	+		Xcc-8004.1427.1	0.71	+1.0
1,368,310	-		Xcc-8004.1427.1	0.71	-1.3
1,368,310	-		Xcc-8004.1427.1	0.71	-0.7
1,368,310	-		Xcc-8004.1427.1	0.71	+0.7
1,368,315	+		Xcc-8004.1427.1	0.73	-2.2
1,368,315	+		Xcc-8004.1427.1	0.73	-1.4
1,368,315	+		Xcc-8004.1427.1	0.73	+0.4
1,368,316	-		Xcc-8004.1427.1	0.73	-0.4
1,368,316	-		Xcc-8004.1427.1	0.73	-0.2
1,368,506	+		Xcc-8004.1428.1	0.17	-1.0
1,368,506	+		Xcc-8004.1428.1	0.17	+1.4
1,368,507	-		Xcc-8004.1428.1	0.18	+0.7
1,368,507	-		Xcc-8004.1428.1	0.18	-0.5
1,368,507	-		Xcc-8004.1428.1	0.18	+0.4
1,368,507	-		Xcc-8004.1428.1	0.18	+0.3
1,368,507	-		Xcc-8004.1428.1	0.18	+0.4
1,368,550	-		Xcc-8004.1428.1	0.24	-0.0
1,368,798	+		Xcc-8004.1428.1	0.62	+2.5
1,368,798	+		Xcc-8004.1428.1	0.62	-0.2
1,368,799	-		Xcc-8004.1428.1	0.63	-1.4
1,368,799	-		Xcc-8004.1428.1	0.63	-1.6
1,368,948	+		Xcc-8004.1428.1	0.86	+0.3
1,368,948	+		Xcc-8004.1428.1	0.86	-1.0
1,368,948	+		Xcc-8004.1428.1	0.86	-0.8
1,368,949	-		Xcc-8004.1428.1	0.86	+0.7
1,368,998	+				+0.9
1,368,999	-				-0.4
1,369,058	+				-0.6
1,369,058	+				-1.2
1,369,059	-				-0.9
1,369,107	+				+0.1
1,369,107	+				-1.2
1,369,107	+				+1.1
1,369,107	+				-0.4
1,369,107	+				-2.6
1,369,107	+				-0.2
1,369,107	+				-0.3
1,369,108	-				-0.5
1,369,108	-				-0.6
1,369,108	-				-1.3
1,369,108	-				-0.3
1,369,108	-				-0.4
1,369,111	+				+2.0
1,369,111	+				-0.3
1,369,112	-				-1.1
1,369,160	+				+0.1
1,369,161	-				+0.1
1,369,161	-				-1.2
1,369,161	-				-0.5
1,369,161	-				+0.5
1,369,322	+				-0.1
1,369,322	+				-0.6
1,369,323	-				-0.1
1,369,323	-				-0.1
1,369,323	-				+1.6
1,369,323	-				+0.6
1,369,323	-				+0.2