Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1408.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1407.1 and Xcc-8004.1408.1 are separated by 0 nucleotidesXcc-8004.1408.1 and Xcc-8004.1409.1 are separated by 192 nucleotides Xcc-8004.1407.1: Xcc-8004.1407.1 - Vibrioferrin receptor PvuA, at 1,337,062 to 1,339,191 Xcc-8004.1407.1 Xcc-8004.1408.1: Xcc-8004.1408.1 - 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (EC 4.1.2.n4), at 1,339,192 to 1,339,953 Xcc-8004.1408.1 Xcc-8004.1409.1: Xcc-8004.1409.1 - Cation:proton antiporter, at 1,340,146 to 1,341,924 Xcc-8004.1409.1 Position (kb) 1339 1340Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1338.288 kb on - strand, within Xcc-8004.1407.1at 1338.407 kb on + strand, within Xcc-8004.1407.1at 1338.516 kb on - strand, within Xcc-8004.1407.1at 1338.560 kb on + strand, within Xcc-8004.1407.1at 1338.851 kb on + strand, within Xcc-8004.1407.1at 1338.852 kb on - strand, within Xcc-8004.1407.1at 1339.001 kb on + strandat 1339.090 kb on + strandat 1339.193 kb on + strandat 1339.193 kb on + strandat 1339.193 kb on + strandat 1339.194 kb on - strandat 1339.194 kb on - strandat 1339.585 kb on - strand, within Xcc-8004.1408.1at 1339.586 kb on + strand, within Xcc-8004.1408.1at 1339.586 kb on + strand, within Xcc-8004.1408.1at 1339.586 kb on + strand, within Xcc-8004.1408.1at 1339.586 kb on + strand, within Xcc-8004.1408.1at 1339.586 kb on + strand, within Xcc-8004.1408.1at 1339.586 kb on + strand, within Xcc-8004.1408.1at 1339.586 kb on + strand, within Xcc-8004.1408.1at 1339.586 kb on + strand, within Xcc-8004.1408.1at 1339.587 kb on - strand, within Xcc-8004.1408.1at 1339.587 kb on - strand, within Xcc-8004.1408.1at 1339.587 kb on - strand, within Xcc-8004.1408.1at 1339.587 kb on - strand, within Xcc-8004.1408.1at 1339.587 kb on - strand, within Xcc-8004.1408.1at 1339.587 kb on - strand, within Xcc-8004.1408.1at 1339.587 kb on - strand, within Xcc-8004.1408.1at 1339.681 kb on - strand, within Xcc-8004.1408.1at 1339.681 kb on - strand, within Xcc-8004.1408.1at 1339.851 kb on + strand, within Xcc-8004.1408.1at 1339.851 kb on + strand, within Xcc-8004.1408.1at 1339.851 kb on + strand, within Xcc-8004.1408.1at 1339.851 kb on + strand, within Xcc-8004.1408.1at 1339.851 kb on + strand, within Xcc-8004.1408.1at 1339.851 kb on + strand, within Xcc-8004.1408.1at 1339.851 kb on + strand, within Xcc-8004.1408.1at 1339.851 kb on + strand, within Xcc-8004.1408.1at 1339.851 kb on + strand, within Xcc-8004.1408.1at 1339.851 kb on + strand, within Xcc-8004.1408.1at 1339.851 kb on + strand, within Xcc-8004.1408.1at 1339.851 kb on + strand, within Xcc-8004.1408.1at 1339.851 kb on + strand, within Xcc-8004.1408.1at 1339.851 kb on + strand, within Xcc-8004.1408.1at 1339.851 kb on + strand, within Xcc-8004.1408.1at 1339.852 kb on - strand, within Xcc-8004.1408.1at 1339.852 kb on - strand, within Xcc-8004.1408.1at 1339.852 kb on - strand, within Xcc-8004.1408.1at 1339.852 kb on - strand, within Xcc-8004.1408.1at 1339.852 kb on - strand, within Xcc-8004.1408.1at 1339.852 kb on - strand, within Xcc-8004.1408.1at 1339.852 kb on - strand, within Xcc-8004.1408.1at 1339.852 kb on - strand, within Xcc-8004.1408.1at 1339.852 kb on - strand, within Xcc-8004.1408.1at 1339.852 kb on - strand, within Xcc-8004.1408.1at 1339.852 kb on - strand, within Xcc-8004.1408.1at 1339.852 kb on - strand, within Xcc-8004.1408.1at 1339.852 kb on - strand, within Xcc-8004.1408.1at 1339.852 kb on - strand, within Xcc-8004.1408.1at 1339.852 kb on - strand, within Xcc-8004.1408.1at 1340.006 kb on + strandat 1340.095 kb on + strandat 1340.096 kb on - strandat 1340.096 kb on - strandat 1340.096 kb on - strandat 1340.096 kb on - strandat 1340.096 kb on - strandat 1340.096 kb on - strandat 1340.096 kb on - strandat 1340.096 kb on - strandat 1340.096 kb on - strandat 1340.096 kb on - strandat 1340.147 kb on + strandat 1340.147 kb on + strandat 1340.148 kb on - strandat 1340.520 kb on + strand, within Xcc-8004.1409.1at 1340.520 kb on + strand, within Xcc-8004.1409.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
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1,338,288 - Xcc-8004.1407.1 0.58 -2.3
1,338,407 + Xcc-8004.1407.1 0.63 +0.1
1,338,516 - Xcc-8004.1407.1 0.68 +0.7
1,338,560 + Xcc-8004.1407.1 0.70 -2.3
1,338,851 + Xcc-8004.1407.1 0.84 -0.8
1,338,852 - Xcc-8004.1407.1 0.84 -0.2
1,339,001 + -0.5
1,339,090 + +0.6
1,339,193 + -0.1
1,339,193 + -0.2
1,339,193 + +0.6
1,339,194 - +1.0
1,339,194 - -0.6
1,339,585 - Xcc-8004.1408.1 0.52 +3.0
1,339,586 + Xcc-8004.1408.1 0.52 +1.3
1,339,586 + Xcc-8004.1408.1 0.52 +1.5
1,339,586 + Xcc-8004.1408.1 0.52 -1.2
1,339,586 + Xcc-8004.1408.1 0.52 -0.8
1,339,586 + Xcc-8004.1408.1 0.52 +0.7
1,339,586 + Xcc-8004.1408.1 0.52 +0.1
1,339,586 + Xcc-8004.1408.1 0.52 -1.0
1,339,586 + Xcc-8004.1408.1 0.52 -0.4
1,339,587 - Xcc-8004.1408.1 0.52 +0.2
1,339,587 - Xcc-8004.1408.1 0.52 +0.1
1,339,587 - Xcc-8004.1408.1 0.52 +0.9
1,339,587 - Xcc-8004.1408.1 0.52 -1.7
1,339,587 - Xcc-8004.1408.1 0.52 +2.1
1,339,587 - Xcc-8004.1408.1 0.52 +0.7
1,339,587 - Xcc-8004.1408.1 0.52 +0.3
1,339,681 - Xcc-8004.1408.1 0.64 +1.5
1,339,681 - Xcc-8004.1408.1 0.64 -0.9
1,339,851 + Xcc-8004.1408.1 0.86 -1.6
1,339,851 + Xcc-8004.1408.1 0.86 +0.1
1,339,851 + Xcc-8004.1408.1 0.86 +0.8
1,339,851 + Xcc-8004.1408.1 0.86 +0.0
1,339,851 + Xcc-8004.1408.1 0.86 +0.4
1,339,851 + Xcc-8004.1408.1 0.86 -0.5
1,339,851 + Xcc-8004.1408.1 0.86 +0.7
1,339,851 + Xcc-8004.1408.1 0.86 +0.5
1,339,851 + Xcc-8004.1408.1 0.86 -0.7
1,339,851 + Xcc-8004.1408.1 0.86 +0.6
1,339,851 + Xcc-8004.1408.1 0.86 -1.1
1,339,851 + Xcc-8004.1408.1 0.86 -0.2
1,339,851 + Xcc-8004.1408.1 0.86 -0.4
1,339,851 + Xcc-8004.1408.1 0.86 +1.0
1,339,851 + Xcc-8004.1408.1 0.86 +0.8
1,339,852 - Xcc-8004.1408.1 0.87 -0.6
1,339,852 - Xcc-8004.1408.1 0.87 +0.3
1,339,852 - Xcc-8004.1408.1 0.87 -0.2
1,339,852 - Xcc-8004.1408.1 0.87 -0.3
1,339,852 - Xcc-8004.1408.1 0.87 -1.0
1,339,852 - Xcc-8004.1408.1 0.87 +0.6
1,339,852 - Xcc-8004.1408.1 0.87 -0.1
1,339,852 - Xcc-8004.1408.1 0.87 -0.6
1,339,852 - Xcc-8004.1408.1 0.87 +1.6
1,339,852 - Xcc-8004.1408.1 0.87 -0.2
1,339,852 - Xcc-8004.1408.1 0.87 -0.0
1,339,852 - Xcc-8004.1408.1 0.87 -0.7
1,339,852 - Xcc-8004.1408.1 0.87 +0.7
1,339,852 - Xcc-8004.1408.1 0.87 -1.5
1,339,852 - Xcc-8004.1408.1 0.87 +3.0
1,340,006 + +0.3
1,340,095 + -0.6
1,340,096 - -1.1
1,340,096 - +1.0
1,340,096 - -0.9
1,340,096 - +0.3
1,340,096 - -0.1
1,340,096 - -0.1
1,340,096 - -1.0
1,340,096 - -1.2
1,340,096 - -0.3
1,340,096 - -0.4
1,340,147 + -0.0
1,340,147 + -0.0
1,340,148 - -0.2
1,340,520 + Xcc-8004.1409.1 0.21 +0.0
1,340,520 + Xcc-8004.1409.1 0.21 +0.1

Or see this region's nucleotide sequence