Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1406.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1405.1 and Xcc-8004.1406.1 overlap by 4 nucleotidesXcc-8004.1406.1 and Xcc-8004.1407.1 are separated by 112 nucleotides Xcc-8004.1405.1: Xcc-8004.1405.1 - Vibrioferrin amide bond forming protein PvsB @ Siderophore synthetase superfamily, group B, at 1,333,852 to 1,335,654 Xcc-8004.1405.1 Xcc-8004.1406.1: Xcc-8004.1406.1 - Vibrioferrin ligase/carboxylase protein PvsA, at 1,335,651 to 1,336,949 Xcc-8004.1406.1 Xcc-8004.1407.1: Xcc-8004.1407.1 - Vibrioferrin receptor PvuA, at 1,337,062 to 1,339,191 Xcc-8004.1407.1 Position (kb) 1335 1336 1337Strain fitness (log2 ratio) -2 -1 0 1 2at 1334.720 kb on + strand, within Xcc-8004.1405.1at 1334.721 kb on - strand, within Xcc-8004.1405.1at 1334.721 kb on - strand, within Xcc-8004.1405.1at 1334.721 kb on - strand, within Xcc-8004.1405.1at 1334.855 kb on + strand, within Xcc-8004.1405.1at 1334.855 kb on + strand, within Xcc-8004.1405.1at 1334.999 kb on - strand, within Xcc-8004.1405.1at 1334.999 kb on - strand, within Xcc-8004.1405.1at 1335.089 kb on + strand, within Xcc-8004.1405.1at 1335.089 kb on + strand, within Xcc-8004.1405.1at 1335.245 kb on + strand, within Xcc-8004.1405.1at 1335.245 kb on + strand, within Xcc-8004.1405.1at 1335.246 kb on - strand, within Xcc-8004.1405.1at 1335.246 kb on - strand, within Xcc-8004.1405.1at 1335.246 kb on - strand, within Xcc-8004.1405.1at 1335.299 kb on + strand, within Xcc-8004.1405.1at 1335.441 kb on - strand, within Xcc-8004.1405.1at 1335.629 kb on + strandat 1335.629 kb on + strandat 1335.630 kb on - strandat 1335.630 kb on - strandat 1335.630 kb on - strandat 1335.763 kb on + strandat 1335.763 kb on + strandat 1335.763 kb on + strandat 1335.898 kb on + strand, within Xcc-8004.1406.1at 1335.898 kb on + strand, within Xcc-8004.1406.1at 1335.899 kb on - strand, within Xcc-8004.1406.1at 1335.899 kb on - strand, within Xcc-8004.1406.1at 1335.899 kb on - strand, within Xcc-8004.1406.1at 1335.899 kb on - strand, within Xcc-8004.1406.1at 1335.901 kb on + strand, within Xcc-8004.1406.1at 1335.901 kb on + strand, within Xcc-8004.1406.1at 1335.902 kb on - strand, within Xcc-8004.1406.1at 1336.039 kb on + strand, within Xcc-8004.1406.1at 1336.095 kb on + strand, within Xcc-8004.1406.1at 1336.345 kb on + strand, within Xcc-8004.1406.1at 1336.345 kb on + strand, within Xcc-8004.1406.1at 1336.346 kb on - strand, within Xcc-8004.1406.1at 1336.346 kb on - strand, within Xcc-8004.1406.1at 1336.538 kb on - strand, within Xcc-8004.1406.1at 1336.538 kb on - strand, within Xcc-8004.1406.1at 1336.917 kb on - strandat 1336.917 kb on - strandat 1337.072 kb on + strandat 1337.073 kb on - strandat 1337.150 kb on + strandat 1337.235 kb on + strandat 1337.250 kb on - strandat 1337.312 kb on + strand, within Xcc-8004.1407.1at 1337.313 kb on - strand, within Xcc-8004.1407.1at 1337.313 kb on - strand, within Xcc-8004.1407.1at 1337.327 kb on + strand, within Xcc-8004.1407.1at 1337.366 kb on + strand, within Xcc-8004.1407.1at 1337.453 kb on + strand, within Xcc-8004.1407.1at 1337.603 kb on + strand, within Xcc-8004.1407.1at 1337.604 kb on - strand, within Xcc-8004.1407.1at 1337.748 kb on - strand, within Xcc-8004.1407.1at 1337.820 kb on + strand, within Xcc-8004.1407.1at 1337.820 kb on + strand, within Xcc-8004.1407.1at 1337.868 kb on - strand, within Xcc-8004.1407.1at 1337.872 kb on + strand, within Xcc-8004.1407.1at 1337.873 kb on - strand, within Xcc-8004.1407.1at 1337.927 kb on + strand, within Xcc-8004.1407.1at 1337.927 kb on + strand, within Xcc-8004.1407.1at 1337.928 kb on - strand, within Xcc-8004.1407.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
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1,334,720 + Xcc-8004.1405.1 0.48 +0.3
1,334,721 - Xcc-8004.1405.1 0.48 -0.2
1,334,721 - Xcc-8004.1405.1 0.48 +0.1
1,334,721 - Xcc-8004.1405.1 0.48 -0.5
1,334,855 + Xcc-8004.1405.1 0.56 +0.3
1,334,855 + Xcc-8004.1405.1 0.56 +0.3
1,334,999 - Xcc-8004.1405.1 0.64 +1.4
1,334,999 - Xcc-8004.1405.1 0.64 +0.6
1,335,089 + Xcc-8004.1405.1 0.69 +1.1
1,335,089 + Xcc-8004.1405.1 0.69 -0.2
1,335,245 + Xcc-8004.1405.1 0.77 -1.9
1,335,245 + Xcc-8004.1405.1 0.77 -0.3
1,335,246 - Xcc-8004.1405.1 0.77 +0.8
1,335,246 - Xcc-8004.1405.1 0.77 +2.1
1,335,246 - Xcc-8004.1405.1 0.77 +0.4
1,335,299 + Xcc-8004.1405.1 0.80 +1.0
1,335,441 - Xcc-8004.1405.1 0.88 -1.2
1,335,629 + -1.7
1,335,629 + -1.5
1,335,630 - -2.0
1,335,630 - -1.4
1,335,630 - +0.5
1,335,763 + +0.3
1,335,763 + -0.5
1,335,763 + +0.0
1,335,898 + Xcc-8004.1406.1 0.19 +0.2
1,335,898 + Xcc-8004.1406.1 0.19 +0.5
1,335,899 - Xcc-8004.1406.1 0.19 +0.4
1,335,899 - Xcc-8004.1406.1 0.19 -1.7
1,335,899 - Xcc-8004.1406.1 0.19 -0.4
1,335,899 - Xcc-8004.1406.1 0.19 -0.8
1,335,901 + Xcc-8004.1406.1 0.19 +1.6
1,335,901 + Xcc-8004.1406.1 0.19 -2.2
1,335,902 - Xcc-8004.1406.1 0.19 -1.9
1,336,039 + Xcc-8004.1406.1 0.30 -1.1
1,336,095 + Xcc-8004.1406.1 0.34 -0.1
1,336,345 + Xcc-8004.1406.1 0.53 -0.5
1,336,345 + Xcc-8004.1406.1 0.53 +0.2
1,336,346 - Xcc-8004.1406.1 0.54 +0.3
1,336,346 - Xcc-8004.1406.1 0.54 +0.3
1,336,538 - Xcc-8004.1406.1 0.68 -0.4
1,336,538 - Xcc-8004.1406.1 0.68 +0.1
1,336,917 - +0.2
1,336,917 - +0.5
1,337,072 + -1.4
1,337,073 - +0.7
1,337,150 + -0.8
1,337,235 + -0.7
1,337,250 - -0.8
1,337,312 + Xcc-8004.1407.1 0.12 +0.2
1,337,313 - Xcc-8004.1407.1 0.12 +0.3
1,337,313 - Xcc-8004.1407.1 0.12 -0.4
1,337,327 + Xcc-8004.1407.1 0.12 -0.4
1,337,366 + Xcc-8004.1407.1 0.14 +0.3
1,337,453 + Xcc-8004.1407.1 0.18 -1.2
1,337,603 + Xcc-8004.1407.1 0.25 +1.1
1,337,604 - Xcc-8004.1407.1 0.25 -0.8
1,337,748 - Xcc-8004.1407.1 0.32 -0.7
1,337,820 + Xcc-8004.1407.1 0.36 +0.0
1,337,820 + Xcc-8004.1407.1 0.36 -0.8
1,337,868 - Xcc-8004.1407.1 0.38 -1.2
1,337,872 + Xcc-8004.1407.1 0.38 +0.9
1,337,873 - Xcc-8004.1407.1 0.38 -0.4
1,337,927 + Xcc-8004.1407.1 0.41 -0.1
1,337,927 + Xcc-8004.1407.1 0.41 -0.6
1,337,928 - Xcc-8004.1407.1 0.41 -0.5

Or see this region's nucleotide sequence