Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1405.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1404.1 and Xcc-8004.1405.1 overlap by 4 nucleotidesXcc-8004.1405.1 and Xcc-8004.1406.1 overlap by 4 nucleotides Xcc-8004.1404.1: Xcc-8004.1404.1 - Vibrioferrin membrane-spanning transport protein PvsC, at 1,332,677 to 1,333,855 Xcc-8004.1404.1 Xcc-8004.1405.1: Xcc-8004.1405.1 - Vibrioferrin amide bond forming protein PvsB @ Siderophore synthetase superfamily, group B, at 1,333,852 to 1,335,654 Xcc-8004.1405.1 Xcc-8004.1406.1: Xcc-8004.1406.1 - Vibrioferrin ligase/carboxylase protein PvsA, at 1,335,651 to 1,336,949 Xcc-8004.1406.1 Position (kb) 1333 1334 1335 1336Strain fitness (log2 ratio) -2 -1 0 1 2at 1333.090 kb on - strand, within Xcc-8004.1404.1at 1333.375 kb on - strand, within Xcc-8004.1404.1at 1333.452 kb on + strand, within Xcc-8004.1404.1at 1333.453 kb on - strand, within Xcc-8004.1404.1at 1333.510 kb on - strand, within Xcc-8004.1404.1at 1333.656 kb on + strand, within Xcc-8004.1404.1at 1333.719 kb on + strand, within Xcc-8004.1404.1at 1333.719 kb on + strand, within Xcc-8004.1404.1at 1333.719 kb on + strand, within Xcc-8004.1404.1at 1333.720 kb on - strand, within Xcc-8004.1404.1at 1333.720 kb on - strand, within Xcc-8004.1404.1at 1333.720 kb on - strand, within Xcc-8004.1404.1at 1333.720 kb on - strand, within Xcc-8004.1404.1at 1333.720 kb on - strand, within Xcc-8004.1404.1at 1333.720 kb on - strand, within Xcc-8004.1404.1at 1333.720 kb on - strand, within Xcc-8004.1404.1at 1333.720 kb on - strand, within Xcc-8004.1404.1at 1334.004 kb on - strandat 1334.114 kb on + strand, within Xcc-8004.1405.1at 1334.357 kb on + strand, within Xcc-8004.1405.1at 1334.357 kb on + strand, within Xcc-8004.1405.1at 1334.357 kb on + strand, within Xcc-8004.1405.1at 1334.357 kb on + strand, within Xcc-8004.1405.1at 1334.357 kb on + strand, within Xcc-8004.1405.1at 1334.357 kb on + strand, within Xcc-8004.1405.1at 1334.358 kb on - strand, within Xcc-8004.1405.1at 1334.358 kb on - strand, within Xcc-8004.1405.1at 1334.448 kb on - strand, within Xcc-8004.1405.1at 1334.595 kb on - strand, within Xcc-8004.1405.1at 1334.595 kb on - strand, within Xcc-8004.1405.1at 1334.720 kb on + strand, within Xcc-8004.1405.1at 1334.721 kb on - strand, within Xcc-8004.1405.1at 1334.721 kb on - strand, within Xcc-8004.1405.1at 1334.721 kb on - strand, within Xcc-8004.1405.1at 1334.855 kb on + strand, within Xcc-8004.1405.1at 1334.855 kb on + strand, within Xcc-8004.1405.1at 1334.999 kb on - strand, within Xcc-8004.1405.1at 1334.999 kb on - strand, within Xcc-8004.1405.1at 1335.089 kb on + strand, within Xcc-8004.1405.1at 1335.089 kb on + strand, within Xcc-8004.1405.1at 1335.245 kb on + strand, within Xcc-8004.1405.1at 1335.245 kb on + strand, within Xcc-8004.1405.1at 1335.246 kb on - strand, within Xcc-8004.1405.1at 1335.246 kb on - strand, within Xcc-8004.1405.1at 1335.246 kb on - strand, within Xcc-8004.1405.1at 1335.299 kb on + strand, within Xcc-8004.1405.1at 1335.441 kb on - strand, within Xcc-8004.1405.1at 1335.629 kb on + strandat 1335.629 kb on + strandat 1335.630 kb on - strandat 1335.630 kb on - strandat 1335.630 kb on - strandat 1335.763 kb on + strandat 1335.763 kb on + strandat 1335.763 kb on + strandat 1335.898 kb on + strand, within Xcc-8004.1406.1at 1335.898 kb on + strand, within Xcc-8004.1406.1at 1335.899 kb on - strand, within Xcc-8004.1406.1at 1335.899 kb on - strand, within Xcc-8004.1406.1at 1335.899 kb on - strand, within Xcc-8004.1406.1at 1335.899 kb on - strand, within Xcc-8004.1406.1at 1335.901 kb on + strand, within Xcc-8004.1406.1at 1335.901 kb on + strand, within Xcc-8004.1406.1at 1335.902 kb on - strand, within Xcc-8004.1406.1at 1336.039 kb on + strand, within Xcc-8004.1406.1at 1336.095 kb on + strand, within Xcc-8004.1406.1at 1336.345 kb on + strand, within Xcc-8004.1406.1at 1336.345 kb on + strand, within Xcc-8004.1406.1at 1336.346 kb on - strand, within Xcc-8004.1406.1at 1336.346 kb on - strand, within Xcc-8004.1406.1at 1336.538 kb on - strand, within Xcc-8004.1406.1at 1336.538 kb on - strand, within Xcc-8004.1406.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
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1,333,090 - Xcc-8004.1404.1 0.35 +0.9
1,333,375 - Xcc-8004.1404.1 0.59 -0.5
1,333,452 + Xcc-8004.1404.1 0.66 -0.4
1,333,453 - Xcc-8004.1404.1 0.66 -0.2
1,333,510 - Xcc-8004.1404.1 0.71 -1.4
1,333,656 + Xcc-8004.1404.1 0.83 -0.3
1,333,719 + Xcc-8004.1404.1 0.88 -2.1
1,333,719 + Xcc-8004.1404.1 0.88 -0.6
1,333,719 + Xcc-8004.1404.1 0.88 -1.7
1,333,720 - Xcc-8004.1404.1 0.88 -0.1
1,333,720 - Xcc-8004.1404.1 0.88 +0.5
1,333,720 - Xcc-8004.1404.1 0.88 -0.2
1,333,720 - Xcc-8004.1404.1 0.88 +1.1
1,333,720 - Xcc-8004.1404.1 0.88 -0.1
1,333,720 - Xcc-8004.1404.1 0.88 +0.1
1,333,720 - Xcc-8004.1404.1 0.88 +2.0
1,333,720 - Xcc-8004.1404.1 0.88 -0.7
1,334,004 - +0.1
1,334,114 + Xcc-8004.1405.1 0.15 -0.2
1,334,357 + Xcc-8004.1405.1 0.28 -0.7
1,334,357 + Xcc-8004.1405.1 0.28 +0.6
1,334,357 + Xcc-8004.1405.1 0.28 +1.0
1,334,357 + Xcc-8004.1405.1 0.28 +0.7
1,334,357 + Xcc-8004.1405.1 0.28 +2.5
1,334,357 + Xcc-8004.1405.1 0.28 +0.2
1,334,358 - Xcc-8004.1405.1 0.28 +0.4
1,334,358 - Xcc-8004.1405.1 0.28 +0.2
1,334,448 - Xcc-8004.1405.1 0.33 -0.5
1,334,595 - Xcc-8004.1405.1 0.41 +0.1
1,334,595 - Xcc-8004.1405.1 0.41 +0.2
1,334,720 + Xcc-8004.1405.1 0.48 +0.3
1,334,721 - Xcc-8004.1405.1 0.48 -0.2
1,334,721 - Xcc-8004.1405.1 0.48 +0.1
1,334,721 - Xcc-8004.1405.1 0.48 -0.5
1,334,855 + Xcc-8004.1405.1 0.56 +0.3
1,334,855 + Xcc-8004.1405.1 0.56 +0.3
1,334,999 - Xcc-8004.1405.1 0.64 +1.4
1,334,999 - Xcc-8004.1405.1 0.64 +0.6
1,335,089 + Xcc-8004.1405.1 0.69 +1.1
1,335,089 + Xcc-8004.1405.1 0.69 -0.2
1,335,245 + Xcc-8004.1405.1 0.77 -1.9
1,335,245 + Xcc-8004.1405.1 0.77 -0.3
1,335,246 - Xcc-8004.1405.1 0.77 +0.8
1,335,246 - Xcc-8004.1405.1 0.77 +2.1
1,335,246 - Xcc-8004.1405.1 0.77 +0.4
1,335,299 + Xcc-8004.1405.1 0.80 +1.0
1,335,441 - Xcc-8004.1405.1 0.88 -1.2
1,335,629 + -1.7
1,335,629 + -1.5
1,335,630 - -2.0
1,335,630 - -1.4
1,335,630 - +0.5
1,335,763 + +0.3
1,335,763 + -0.5
1,335,763 + +0.0
1,335,898 + Xcc-8004.1406.1 0.19 +0.2
1,335,898 + Xcc-8004.1406.1 0.19 +0.5
1,335,899 - Xcc-8004.1406.1 0.19 +0.4
1,335,899 - Xcc-8004.1406.1 0.19 -1.7
1,335,899 - Xcc-8004.1406.1 0.19 -0.4
1,335,899 - Xcc-8004.1406.1 0.19 -0.8
1,335,901 + Xcc-8004.1406.1 0.19 +1.6
1,335,901 + Xcc-8004.1406.1 0.19 -2.2
1,335,902 - Xcc-8004.1406.1 0.19 -1.9
1,336,039 + Xcc-8004.1406.1 0.30 -1.1
1,336,095 + Xcc-8004.1406.1 0.34 -0.1
1,336,345 + Xcc-8004.1406.1 0.53 -0.5
1,336,345 + Xcc-8004.1406.1 0.53 +0.2
1,336,346 - Xcc-8004.1406.1 0.54 +0.3
1,336,346 - Xcc-8004.1406.1 0.54 +0.3
1,336,538 - Xcc-8004.1406.1 0.68 -0.4
1,336,538 - Xcc-8004.1406.1 0.68 +0.1

Or see this region's nucleotide sequence