Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1403.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1402.1 and Xcc-8004.1403.1 overlap by 4 nucleotidesXcc-8004.1403.1 and Xcc-8004.1404.1 overlap by 23 nucleotides Xcc-8004.1402.1: Xcc-8004.1402.1 - Vibrioferrin decarboxylase protein PvsE, at 1,329,650 to 1,330,933 Xcc-8004.1402.1 Xcc-8004.1403.1: Xcc-8004.1403.1 - Vibrioferrin amide bond forming protein PvsD @ Siderophore synthetase superfamily, group A, at 1,330,930 to 1,332,699 Xcc-8004.1403.1 Xcc-8004.1404.1: Xcc-8004.1404.1 - Vibrioferrin membrane-spanning transport protein PvsC, at 1,332,677 to 1,333,855 Xcc-8004.1404.1 Position (kb) 1330 1331 1332 1333Strain fitness (log2 ratio) -2 -1 0 1 2at 1330.068 kb on + strand, within Xcc-8004.1402.1at 1330.068 kb on + strand, within Xcc-8004.1402.1at 1330.092 kb on + strand, within Xcc-8004.1402.1at 1330.093 kb on - strand, within Xcc-8004.1402.1at 1330.200 kb on + strand, within Xcc-8004.1402.1at 1330.201 kb on - strand, within Xcc-8004.1402.1at 1330.201 kb on - strand, within Xcc-8004.1402.1at 1330.284 kb on + strand, within Xcc-8004.1402.1at 1330.285 kb on - strand, within Xcc-8004.1402.1at 1330.285 kb on - strand, within Xcc-8004.1402.1at 1330.380 kb on - strand, within Xcc-8004.1402.1at 1330.723 kb on - strand, within Xcc-8004.1402.1at 1330.845 kb on + strandat 1330.851 kb on + strandat 1330.851 kb on + strandat 1330.852 kb on - strandat 1330.852 kb on - strandat 1330.852 kb on - strandat 1330.852 kb on - strandat 1330.852 kb on - strandat 1330.859 kb on + strandat 1330.859 kb on + strandat 1330.860 kb on - strandat 1330.883 kb on + strandat 1330.883 kb on + strandat 1330.883 kb on + strandat 1330.884 kb on - strandat 1330.988 kb on + strandat 1330.989 kb on - strandat 1331.197 kb on - strand, within Xcc-8004.1403.1at 1331.213 kb on + strand, within Xcc-8004.1403.1at 1331.214 kb on - strand, within Xcc-8004.1403.1at 1331.246 kb on + strand, within Xcc-8004.1403.1at 1331.246 kb on + strand, within Xcc-8004.1403.1at 1331.247 kb on - strand, within Xcc-8004.1403.1at 1331.249 kb on + strand, within Xcc-8004.1403.1at 1331.460 kb on - strand, within Xcc-8004.1403.1at 1331.460 kb on - strand, within Xcc-8004.1403.1at 1331.579 kb on - strand, within Xcc-8004.1403.1at 1331.627 kb on + strand, within Xcc-8004.1403.1at 1331.822 kb on + strand, within Xcc-8004.1403.1at 1331.822 kb on + strand, within Xcc-8004.1403.1at 1331.822 kb on + strand, within Xcc-8004.1403.1at 1331.823 kb on - strand, within Xcc-8004.1403.1at 1331.823 kb on - strand, within Xcc-8004.1403.1at 1331.863 kb on + strand, within Xcc-8004.1403.1at 1331.864 kb on - strand, within Xcc-8004.1403.1at 1331.864 kb on - strand, within Xcc-8004.1403.1at 1331.864 kb on - strand, within Xcc-8004.1403.1at 1331.864 kb on - strand, within Xcc-8004.1403.1at 1331.883 kb on - strand, within Xcc-8004.1403.1at 1331.883 kb on - strand, within Xcc-8004.1403.1at 1331.900 kb on + strand, within Xcc-8004.1403.1at 1331.900 kb on + strand, within Xcc-8004.1403.1at 1331.900 kb on + strand, within Xcc-8004.1403.1at 1331.901 kb on - strand, within Xcc-8004.1403.1at 1331.901 kb on - strand, within Xcc-8004.1403.1at 1332.035 kb on + strand, within Xcc-8004.1403.1at 1332.125 kb on + strand, within Xcc-8004.1403.1at 1332.125 kb on + strand, within Xcc-8004.1403.1at 1332.126 kb on - strand, within Xcc-8004.1403.1at 1332.256 kb on - strand, within Xcc-8004.1403.1at 1332.575 kb on + strandat 1332.576 kb on - strandat 1332.620 kb on + strandat 1333.090 kb on - strand, within Xcc-8004.1404.1at 1333.375 kb on - strand, within Xcc-8004.1404.1at 1333.452 kb on + strand, within Xcc-8004.1404.1at 1333.453 kb on - strand, within Xcc-8004.1404.1at 1333.510 kb on - strand, within Xcc-8004.1404.1at 1333.656 kb on + strand, within Xcc-8004.1404.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
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1,330,068 + Xcc-8004.1402.1 0.33 -1.0
1,330,068 + Xcc-8004.1402.1 0.33 -0.8
1,330,092 + Xcc-8004.1402.1 0.34 -0.8
1,330,093 - Xcc-8004.1402.1 0.35 -0.2
1,330,200 + Xcc-8004.1402.1 0.43 +1.5
1,330,201 - Xcc-8004.1402.1 0.43 +0.1
1,330,201 - Xcc-8004.1402.1 0.43 +1.0
1,330,284 + Xcc-8004.1402.1 0.49 -0.1
1,330,285 - Xcc-8004.1402.1 0.49 +0.2
1,330,285 - Xcc-8004.1402.1 0.49 -1.1
1,330,380 - Xcc-8004.1402.1 0.57 -2.2
1,330,723 - Xcc-8004.1402.1 0.84 -0.3
1,330,845 + -0.1
1,330,851 + -0.3
1,330,851 + +0.2
1,330,852 - -2.2
1,330,852 - -0.5
1,330,852 - -0.5
1,330,852 - -1.4
1,330,852 - +0.2
1,330,859 + -0.5
1,330,859 + -0.2
1,330,860 - -1.9
1,330,883 + -0.5
1,330,883 + -0.5
1,330,883 + +0.4
1,330,884 - +1.2
1,330,988 + -1.9
1,330,989 - -0.4
1,331,197 - Xcc-8004.1403.1 0.15 +0.5
1,331,213 + Xcc-8004.1403.1 0.16 -1.0
1,331,214 - Xcc-8004.1403.1 0.16 -0.7
1,331,246 + Xcc-8004.1403.1 0.18 +0.5
1,331,246 + Xcc-8004.1403.1 0.18 -0.5
1,331,247 - Xcc-8004.1403.1 0.18 -0.9
1,331,249 + Xcc-8004.1403.1 0.18 +1.2
1,331,460 - Xcc-8004.1403.1 0.30 -0.0
1,331,460 - Xcc-8004.1403.1 0.30 -0.3
1,331,579 - Xcc-8004.1403.1 0.37 -0.8
1,331,627 + Xcc-8004.1403.1 0.39 -0.5
1,331,822 + Xcc-8004.1403.1 0.50 -0.7
1,331,822 + Xcc-8004.1403.1 0.50 -0.9
1,331,822 + Xcc-8004.1403.1 0.50 -0.0
1,331,823 - Xcc-8004.1403.1 0.50 +0.6
1,331,823 - Xcc-8004.1403.1 0.50 -0.5
1,331,863 + Xcc-8004.1403.1 0.53 -0.9
1,331,864 - Xcc-8004.1403.1 0.53 -1.2
1,331,864 - Xcc-8004.1403.1 0.53 -0.1
1,331,864 - Xcc-8004.1403.1 0.53 -2.0
1,331,864 - Xcc-8004.1403.1 0.53 +0.0
1,331,883 - Xcc-8004.1403.1 0.54 +0.2
1,331,883 - Xcc-8004.1403.1 0.54 -1.1
1,331,900 + Xcc-8004.1403.1 0.55 +0.0
1,331,900 + Xcc-8004.1403.1 0.55 -2.2
1,331,900 + Xcc-8004.1403.1 0.55 -0.3
1,331,901 - Xcc-8004.1403.1 0.55 +0.4
1,331,901 - Xcc-8004.1403.1 0.55 -1.0
1,332,035 + Xcc-8004.1403.1 0.62 +2.0
1,332,125 + Xcc-8004.1403.1 0.68 -1.4
1,332,125 + Xcc-8004.1403.1 0.68 +0.5
1,332,126 - Xcc-8004.1403.1 0.68 +0.4
1,332,256 - Xcc-8004.1403.1 0.75 +0.4
1,332,575 + -0.1
1,332,576 - -1.1
1,332,620 + +0.0
1,333,090 - Xcc-8004.1404.1 0.35 +0.9
1,333,375 - Xcc-8004.1404.1 0.59 -0.5
1,333,452 + Xcc-8004.1404.1 0.66 -0.4
1,333,453 - Xcc-8004.1404.1 0.66 -0.2
1,333,510 - Xcc-8004.1404.1 0.71 -1.4
1,333,656 + Xcc-8004.1404.1 0.83 -0.3

Or see this region's nucleotide sequence