Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1362.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
1,286,728	+				-0.3
1,286,728	+				+0.6
1,286,729	-		Xcc-8004.1361.1	0.10	+0.5
1,286,729	-		Xcc-8004.1361.1	0.10	-1.8
1,287,564	+				+0.9
1,287,564	+				-1.7
1,287,564	+				+0.2
1,287,565	-				-1.9
1,287,569	+				+0.0
1,287,569	+				-1.1
1,287,569	+				-0.1
1,287,569	+				+0.2
1,287,570	-				-0.1
1,287,570	-				+0.5
1,287,570	-				-1.4
1,287,633	+				-1.1
1,287,923	+		Xcc-8004.1362.1	0.28	+2.0
1,287,923	+		Xcc-8004.1362.1	0.28	+1.4
1,287,923	+		Xcc-8004.1362.1	0.28	-1.0
1,287,924	-		Xcc-8004.1362.1	0.28	-0.9
1,287,924	-		Xcc-8004.1362.1	0.28	+3.0
1,287,924	-		Xcc-8004.1362.1	0.28	-0.9
1,288,065	+		Xcc-8004.1362.1	0.42	+0.0
1,288,065	+		Xcc-8004.1362.1	0.42	-0.3
1,288,066	-		Xcc-8004.1362.1	0.42	+1.5
1,288,066	-		Xcc-8004.1362.1	0.42	-1.6
1,288,066	-		Xcc-8004.1362.1	0.42	-1.0
1,288,066	-		Xcc-8004.1362.1	0.42	+1.0
1,288,066	-		Xcc-8004.1362.1	0.42	+0.7
1,288,172	+		Xcc-8004.1362.1	0.53	+0.4
1,288,173	-		Xcc-8004.1362.1	0.53	+0.2
1,288,437	+		Xcc-8004.1362.1	0.80	-1.2
1,288,438	-		Xcc-8004.1362.1	0.80	-1.4
1,288,702	+				-1.1
1,288,702	+				-0.0
1,288,702	+				+0.0
1,288,702	+				-0.4
1,288,702	+				-0.6
1,288,702	+				-0.9
1,288,702	+				+0.2
1,288,702	+				+1.4
1,288,702	+				-0.1
1,288,702	+				-2.4
1,288,702	+				+0.2
1,288,702	+				-0.4
1,288,702	+				+1.3
1,288,702	+				-0.3
1,288,702	+				+0.1
1,288,703	-				+0.7
1,288,703	-				+1.6
1,288,703	-				-1.4
1,288,703	-				+1.2
1,288,703	-				-1.7
1,288,703	-				+0.2
1,288,703	-				-0.0
1,289,283	+		Xcc-8004.1363.1	0.80	-0.3