Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1335.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
1,264,882	-				+0.6
1,264,903	+				-0.5
1,264,934	+				+1.4
1,264,934	+				+0.2
1,264,935	-				-0.3
1,265,041	-				+0.6
1,265,041	-				-0.0
1,265,223	+				-0.7
1,265,223	+				-0.9
1,265,223	+				+3.0
1,265,224	-				+1.3
1,265,224	-				-0.6
1,265,224	-				+1.8
1,265,325	-				-0.4
1,265,447	-		Xcc-8004.1334.1	0.62	-0.3
1,266,396	-		Xcc-8004.1336.1	0.16	-0.9
1,266,396	-		Xcc-8004.1336.1	0.16	+3.0
1,266,500	+		Xcc-8004.1336.1	0.24	+0.0
1,266,500	+		Xcc-8004.1336.1	0.24	-1.6
1,266,508	-		Xcc-8004.1336.1	0.24	+1.0
1,266,508	-		Xcc-8004.1336.1	0.24	+0.2
1,266,508	-		Xcc-8004.1336.1	0.24	+0.7
1,266,557	+		Xcc-8004.1336.1	0.28	+1.2
1,266,558	-		Xcc-8004.1336.1	0.28	-0.7
1,266,563	+		Xcc-8004.1336.1	0.29	-0.7
1,266,563	+		Xcc-8004.1336.1	0.29	+3.0
1,266,563	+		Xcc-8004.1336.1	0.29	-0.1
1,266,564	-		Xcc-8004.1336.1	0.29	+3.0
1,266,611	+		Xcc-8004.1336.1	0.32	-0.4
1,266,854	+		Xcc-8004.1336.1	0.50	-1.1
1,266,855	-		Xcc-8004.1336.1	0.50	-1.1
1,266,855	-		Xcc-8004.1336.1	0.50	+2.0
1,266,869	-		Xcc-8004.1336.1	0.51	-1.8