Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1198.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
1,131,995	-		Xcc-8004.1196.1	0.83	-0.6
1,131,995	-		Xcc-8004.1196.1	0.83	-1.0
1,132,231	+				+0.1
1,132,231	+				-0.7
1,132,232	-				+0.4
1,132,232	-				-1.1
1,132,232	-				-1.1
1,132,232	-				-2.4
1,132,232	-				-0.8
1,132,357	+				-1.1
1,132,357	+				-1.7
1,132,357	+				-0.3
1,132,358	-				+1.1
1,132,363	+				-0.4
1,132,363	+				-1.1
1,132,364	-				+0.5
1,132,409	-				-1.0
1,132,429	-				+0.4
1,132,542	+				+0.8
1,132,551	+				+0.0
1,132,551	+				-0.0
1,132,551	+				-0.2
1,132,551	+				-0.4
1,132,551	+				+0.3
1,132,551	+				-0.4
1,132,551	+				-0.6
1,132,551	+				+0.8
1,132,551	+				-2.0
1,132,551	+				-0.6
1,132,551	+				-0.3
1,132,551	+				-0.1
1,132,719	+				+1.1
1,132,720	-				+0.4
1,132,808	+				+0.4
1,132,808	+				-1.6
1,132,809	-				+0.2
1,132,809	-				-1.7
1,132,942	+				+0.2
1,132,943	-				+0.2
1,132,953	-				+0.8
1,133,187	+		Xcc-8004.1198.1	0.30	-0.6
1,133,188	-		Xcc-8004.1198.1	0.31	-0.3
1,133,188	-		Xcc-8004.1198.1	0.31	+0.2
1,133,188	-		Xcc-8004.1198.1	0.31	+0.2
1,133,188	-		Xcc-8004.1198.1	0.31	-1.4
1,133,396	+		Xcc-8004.1198.1	0.63	-0.3
1,133,397	-		Xcc-8004.1198.1	0.63	-0.8
1,133,397	-		Xcc-8004.1198.1	0.63	+1.2
1,133,397	-		Xcc-8004.1198.1	0.63	+1.0
1,133,397	-		Xcc-8004.1198.1	0.63	+0.3
1,133,397	-		Xcc-8004.1198.1	0.63	-1.4
1,133,444	+		Xcc-8004.1198.1	0.70	-0.7
1,133,444	+		Xcc-8004.1198.1	0.70	-0.3
1,133,445	-		Xcc-8004.1198.1	0.70	+0.0
1,133,512	-		Xcc-8004.1198.1	0.80	+1.0
1,133,619	+				-0.0
1,133,619	+				+0.4
1,133,620	-				+0.4
1,133,620	-				-1.2
1,133,620	-				+0.3
1,133,637	+				+0.1
1,133,763	+				+0.4