Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06546

Experiment: Sebacic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06544 and H281DRAFT_06545 are separated by 118 nucleotidesH281DRAFT_06545 and H281DRAFT_06546 are separated by 259 nucleotidesH281DRAFT_06546 and H281DRAFT_06547 are separated by 138 nucleotidesH281DRAFT_06547 and H281DRAFT_06548 overlap by 4 nucleotides H281DRAFT_06544: H281DRAFT_06544 - catalase, at 30,372 to 31,466 _06544 H281DRAFT_06545: H281DRAFT_06545 - protein of unknown function (DUF4148), at 31,585 to 31,851 _06545 H281DRAFT_06546: H281DRAFT_06546 - hypothetical protein, at 32,111 to 32,842 _06546 H281DRAFT_06547: H281DRAFT_06547 - RNA polymerase sigma-70 factor, ECF subfamily, at 32,981 to 33,499 _06547 H281DRAFT_06548: H281DRAFT_06548 - Transmembrane transcriptional regulator (anti-sigma factor RsiW), at 33,496 to 34,323 _06548 Position (kb) 32 33Strain fitness (log2 ratio) -3 -2 -1 0 1at 31.191 kb on + strand, within H281DRAFT_06544at 31.226 kb on + strand, within H281DRAFT_06544at 31.313 kb on + strand, within H281DRAFT_06544at 31.314 kb on - strand, within H281DRAFT_06544at 31.364 kb on + strandat 31.365 kb on - strandat 31.365 kb on - strandat 31.366 kb on + strandat 31.367 kb on - strandat 31.367 kb on - strandat 31.367 kb on - strandat 31.438 kb on - strandat 31.761 kb on - strand, within H281DRAFT_06545at 31.761 kb on - strand, within H281DRAFT_06545at 31.913 kb on + strandat 31.913 kb on + strandat 31.960 kb on - strandat 31.960 kb on - strandat 31.984 kb on + strandat 32.216 kb on + strandat 32.259 kb on - strand, within H281DRAFT_06546at 32.739 kb on + strand, within H281DRAFT_06546at 32.739 kb on + strand, within H281DRAFT_06546at 32.740 kb on - strand, within H281DRAFT_06546at 32.882 kb on + strandat 32.979 kb on + strandat 32.979 kb on + strandat 33.029 kb on + strandat 33.151 kb on + strand, within H281DRAFT_06547at 33.152 kb on - strand, within H281DRAFT_06547at 33.368 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sebacic (C)
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31,191 + H281DRAFT_06544 0.75 -0.5
31,226 + H281DRAFT_06544 0.78 -2.4
31,313 + H281DRAFT_06544 0.86 -0.6
31,314 - H281DRAFT_06544 0.86 +0.1
31,364 + -0.7
31,365 - -2.0
31,365 - +0.1
31,366 + -0.0
31,367 - -2.9
31,367 - -0.9
31,367 - +0.3
31,438 - -2.9
31,761 - H281DRAFT_06545 0.66 +0.2
31,761 - H281DRAFT_06545 0.66 +0.0
31,913 + -1.1
31,913 + +0.6
31,960 - -0.7
31,960 - -1.0
31,984 + +0.0
32,216 + +1.7
32,259 - H281DRAFT_06546 0.20 +1.0
32,739 + H281DRAFT_06546 0.86 -0.1
32,739 + H281DRAFT_06546 0.86 +0.9
32,740 - H281DRAFT_06546 0.86 +1.4
32,882 + +0.8
32,979 + +0.4
32,979 + -0.3
33,029 + +0.3
33,151 + H281DRAFT_06547 0.33 -3.2
33,152 - H281DRAFT_06547 0.33 -1.2
33,368 + +1.0

Or see this region's nucleotide sequence