Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06517

Experiment: Sebacic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06515 and H281DRAFT_06516 overlap by 4 nucleotidesH281DRAFT_06516 and H281DRAFT_06517 are separated by 248 nucleotidesH281DRAFT_06517 and H281DRAFT_06518 are separated by 92 nucleotides H281DRAFT_06515: H281DRAFT_06515 - uncharacterized domain 1-containing protein, at 64,599 to 65,054 _06515 H281DRAFT_06516: H281DRAFT_06516 - transcriptional regulator, TetR family, at 65,051 to 65,644 _06516 H281DRAFT_06517: H281DRAFT_06517 - DNA-binding transcriptional regulator, LysR family, at 65,893 to 66,837 _06517 H281DRAFT_06518: H281DRAFT_06518 - hypothetical protein, at 66,930 to 67,103 _06518 Position (kb) 65 66 67Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 65.035 kb on - strandat 65.109 kb on - strandat 65.679 kb on - strandat 65.901 kb on + strandat 66.234 kb on + strand, within H281DRAFT_06517at 66.444 kb on - strandat 66.444 kb on - strand, within H281DRAFT_06517at 66.843 kb on - strandat 66.849 kb on - strandat 66.849 kb on - strandat 66.904 kb on + strandat 67.047 kb on - strand, within H281DRAFT_06518at 67.047 kb on - strand, within H281DRAFT_06518at 67.061 kb on + strand, within H281DRAFT_06518at 67.061 kb on + strand, within H281DRAFT_06518at 67.062 kb on - strand, within H281DRAFT_06518at 67.062 kb on - strand, within H281DRAFT_06518

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Per-strain Table

Position Strand Gene LocusTag Fraction Sebacic (C)
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65,035 - -0.5
65,109 - -0.5
65,679 - -2.7
65,901 + +0.2
66,234 + H281DRAFT_06517 0.36 +0.7
66,444 - -0.3
66,444 - H281DRAFT_06517 0.58 +0.3
66,843 - -2.1
66,849 - +0.3
66,849 - +0.1
66,904 + -0.7
67,047 - H281DRAFT_06518 0.67 -3.8
67,047 - H281DRAFT_06518 0.67 -2.0
67,061 + H281DRAFT_06518 0.75 -2.5
67,061 + H281DRAFT_06518 0.75 +1.4
67,062 - H281DRAFT_06518 0.76 -1.4
67,062 - H281DRAFT_06518 0.76 -1.1

Or see this region's nucleotide sequence