Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06457

Experiment: Sebacic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06455 and H281DRAFT_06456 overlap by 102 nucleotidesH281DRAFT_06456 and H281DRAFT_06457 are separated by 587 nucleotidesH281DRAFT_06457 and H281DRAFT_06458 are separated by 207 nucleotidesH281DRAFT_06458 and H281DRAFT_06459 overlap by 4 nucleotides H281DRAFT_06455: H281DRAFT_06455 - transcriptional regulator, TraR/DksA family, at 64,970 to 65,350 _06455 H281DRAFT_06456: H281DRAFT_06456 - hypothetical protein, at 65,249 to 65,656 _06456 H281DRAFT_06457: H281DRAFT_06457 - hypothetical protein, at 66,244 to 66,456 _06457 H281DRAFT_06458: H281DRAFT_06458 - hypothetical protein, at 66,664 to 67,173 _06458 H281DRAFT_06459: H281DRAFT_06459 - flagellar motor switch protein FliG, at 67,170 to 68,165 _06459 Position (kb) 66 67Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 65.258 kb on - strandat 65.258 kb on - strandat 65.490 kb on + strand, within H281DRAFT_06456at 65.491 kb on - strand, within H281DRAFT_06456at 65.498 kb on - strand, within H281DRAFT_06456at 65.498 kb on - strand, within H281DRAFT_06456at 65.500 kb on + strand, within H281DRAFT_06456at 65.587 kb on - strand, within H281DRAFT_06456at 65.688 kb on + strandat 65.734 kb on + strandat 65.806 kb on - strandat 65.806 kb on - strandat 65.806 kb on - strandat 65.928 kb on - strandat 65.953 kb on + strandat 66.154 kb on - strandat 66.212 kb on + strandat 66.371 kb on + strand, within H281DRAFT_06457at 66.371 kb on + strand, within H281DRAFT_06457at 66.371 kb on + strand, within H281DRAFT_06457at 66.371 kb on + strand, within H281DRAFT_06457at 66.371 kb on + strand, within H281DRAFT_06457at 66.371 kb on + strand, within H281DRAFT_06457at 66.372 kb on - strand, within H281DRAFT_06457at 66.372 kb on - strand, within H281DRAFT_06457at 66.404 kb on + strand, within H281DRAFT_06457at 66.441 kb on + strandat 66.442 kb on - strandat 66.484 kb on + strandat 66.485 kb on - strandat 66.485 kb on - strandat 66.622 kb on + strandat 66.623 kb on - strandat 66.742 kb on + strand, within H281DRAFT_06458at 67.006 kb on + strand, within H281DRAFT_06458at 67.008 kb on + strand, within H281DRAFT_06458at 67.008 kb on + strand, within H281DRAFT_06458at 67.008 kb on + strand, within H281DRAFT_06458at 67.008 kb on + strand, within H281DRAFT_06458at 67.009 kb on - strand, within H281DRAFT_06458at 67.009 kb on - strand, within H281DRAFT_06458at 67.009 kb on - strand, within H281DRAFT_06458at 67.009 kb on - strand, within H281DRAFT_06458

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Per-strain Table

Position Strand Gene LocusTag Fraction Sebacic (C)
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65,258 - +0.4
65,258 - +1.1
65,490 + H281DRAFT_06456 0.59 +0.4
65,491 - H281DRAFT_06456 0.59 +1.1
65,498 - H281DRAFT_06456 0.61 -0.1
65,498 - H281DRAFT_06456 0.61 -1.4
65,500 + H281DRAFT_06456 0.62 +0.9
65,587 - H281DRAFT_06456 0.83 +0.8
65,688 + +1.0
65,734 + +0.8
65,806 - -1.6
65,806 - +0.2
65,806 - -0.3
65,928 - -0.9
65,953 + +1.2
66,154 - +0.1
66,212 + -1.0
66,371 + H281DRAFT_06457 0.60 -2.3
66,371 + H281DRAFT_06457 0.60 -1.5
66,371 + H281DRAFT_06457 0.60 -3.6
66,371 + H281DRAFT_06457 0.60 +0.6
66,371 + H281DRAFT_06457 0.60 +0.4
66,371 + H281DRAFT_06457 0.60 -0.1
66,372 - H281DRAFT_06457 0.60 +0.4
66,372 - H281DRAFT_06457 0.60 +0.3
66,404 + H281DRAFT_06457 0.75 -0.8
66,441 + +1.4
66,442 - +0.1
66,484 + +2.0
66,485 - -0.3
66,485 - -0.3
66,622 + -0.0
66,623 - -0.7
66,742 + H281DRAFT_06458 0.15 +0.9
67,006 + H281DRAFT_06458 0.67 +0.1
67,008 + H281DRAFT_06458 0.67 -0.4
67,008 + H281DRAFT_06458 0.67 +0.6
67,008 + H281DRAFT_06458 0.67 +0.8
67,008 + H281DRAFT_06458 0.67 +0.3
67,009 - H281DRAFT_06458 0.68 +0.5
67,009 - H281DRAFT_06458 0.68 -0.7
67,009 - H281DRAFT_06458 0.68 -3.0
67,009 - H281DRAFT_06458 0.68 +0.3

Or see this region's nucleotide sequence