Experiment: Sebacic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06398 and H281DRAFT_06399 are separated by 242 nucleotides H281DRAFT_06399 and H281DRAFT_06400 are separated by 812 nucleotides
H281DRAFT_06398: H281DRAFT_06398 - amino acid/amide ABC transporter substrate-binding protein, HAAT family, at 69,119 to 70,327
_06398
H281DRAFT_06399: H281DRAFT_06399 - transcriptional regulator, GntR family, at 70,570 to 71,418
_06399
H281DRAFT_06400: H281DRAFT_06400 - hypothetical protein, at 72,231 to 72,695
_06400
Position (kb) 70
71
72 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 69.718 kb on - strand, within H281DRAFT_06398 at 69.729 kb on - strand, within H281DRAFT_06398 at 69.795 kb on + strand, within H281DRAFT_06398 at 70.012 kb on + strand, within H281DRAFT_06398 at 70.173 kb on + strand, within H281DRAFT_06398 at 70.174 kb on - strand, within H281DRAFT_06398 at 70.419 kb on - strand at 70.731 kb on - strand, within H281DRAFT_06399 at 70.864 kb on + strand, within H281DRAFT_06399 at 70.901 kb on - strand, within H281DRAFT_06399 at 71.271 kb on - strand, within H281DRAFT_06399 at 71.340 kb on + strand at 71.793 kb on - strand at 71.793 kb on - strand at 71.802 kb on + strand at 71.803 kb on - strand at 72.118 kb on - strand at 72.243 kb on - strand at 72.356 kb on - strand, within H281DRAFT_06400 at 72.413 kb on - strand, within H281DRAFT_06400
Per-strain Table
Position Strand Gene LocusTag Fraction Sebacic (C) remove 69,718 - H281DRAFT_06398 0.50 +0.0 69,729 - H281DRAFT_06398 0.50 +0.5 69,795 + H281DRAFT_06398 0.56 +0.2 70,012 + H281DRAFT_06398 0.74 +0.5 70,173 + H281DRAFT_06398 0.87 +0.6 70,174 - H281DRAFT_06398 0.87 -1.5 70,419 - -0.0 70,731 - H281DRAFT_06399 0.19 +0.7 70,864 + H281DRAFT_06399 0.35 +2.8 70,901 - H281DRAFT_06399 0.39 +1.2 71,271 - H281DRAFT_06399 0.83 -3.5 71,340 + -1.5 71,793 - -0.2 71,793 - -0.7 71,802 + +0.2 71,803 - -1.5 72,118 - +1.0 72,243 - +0.9 72,356 - H281DRAFT_06400 0.27 -0.3 72,413 - H281DRAFT_06400 0.39 -1.3
Or see this region's nucleotide sequence