Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06207

Experiment: Sebacic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06206 and H281DRAFT_06207 are separated by 441 nucleotidesH281DRAFT_06207 and H281DRAFT_06208 are separated by 340 nucleotides H281DRAFT_06206: H281DRAFT_06206 - 2-methylcitrate dehydratase PrpD, at 97,733 to 99,223 _06206 H281DRAFT_06207: H281DRAFT_06207 - Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit, at 99,665 to 100,237 _06207 H281DRAFT_06208: H281DRAFT_06208 - Sugar phosphate permease, at 100,578 to 101,780 _06208 Position (kb) 99 100 101Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 98.669 kb on + strand, within H281DRAFT_06206at 98.669 kb on + strand, within H281DRAFT_06206at 98.669 kb on + strand, within H281DRAFT_06206at 98.669 kb on + strand, within H281DRAFT_06206at 98.670 kb on - strand, within H281DRAFT_06206at 98.670 kb on - strand, within H281DRAFT_06206at 98.670 kb on - strand, within H281DRAFT_06206at 98.775 kb on + strand, within H281DRAFT_06206at 98.775 kb on + strand, within H281DRAFT_06206at 98.776 kb on - strand, within H281DRAFT_06206at 98.776 kb on - strand, within H281DRAFT_06206at 98.776 kb on - strand, within H281DRAFT_06206at 98.776 kb on - strand, within H281DRAFT_06206at 98.776 kb on - strandat 98.852 kb on + strandat 98.852 kb on + strand, within H281DRAFT_06206at 98.853 kb on - strandat 98.955 kb on + strand, within H281DRAFT_06206at 98.955 kb on + strand, within H281DRAFT_06206at 98.959 kb on + strand, within H281DRAFT_06206at 98.960 kb on - strand, within H281DRAFT_06206at 99.007 kb on + strand, within H281DRAFT_06206at 99.008 kb on - strand, within H281DRAFT_06206at 99.061 kb on + strand, within H281DRAFT_06206at 99.061 kb on + strand, within H281DRAFT_06206at 99.180 kb on + strandat 99.181 kb on - strandat 99.181 kb on - strandat 99.197 kb on - strandat 99.534 kb on - strandat 99.546 kb on + strandat 99.547 kb on - strandat 99.602 kb on + strandat 99.603 kb on - strandat 99.603 kb on - strandat 99.607 kb on + strandat 99.608 kb on - strandat 99.630 kb on - strandat 99.630 kb on - strandat 99.761 kb on + strand, within H281DRAFT_06207at 99.762 kb on - strand, within H281DRAFT_06207at 99.901 kb on + strand, within H281DRAFT_06207at 99.904 kb on + strand, within H281DRAFT_06207at 99.953 kb on - strand, within H281DRAFT_06207at 99.973 kb on + strand, within H281DRAFT_06207at 100.024 kb on + strand, within H281DRAFT_06207at 100.025 kb on - strand, within H281DRAFT_06207at 100.025 kb on - strand, within H281DRAFT_06207at 100.025 kb on - strand, within H281DRAFT_06207at 100.025 kb on - strand, within H281DRAFT_06207at 100.025 kb on - strand, within H281DRAFT_06207at 100.073 kb on + strand, within H281DRAFT_06207at 100.074 kb on - strand, within H281DRAFT_06207at 100.153 kb on - strand, within H281DRAFT_06207at 100.153 kb on - strand, within H281DRAFT_06207at 100.166 kb on + strand, within H281DRAFT_06207at 100.166 kb on + strand, within H281DRAFT_06207at 100.166 kb on + strand, within H281DRAFT_06207at 100.176 kb on - strand, within H281DRAFT_06207at 100.205 kb on + strandat 100.218 kb on + strandat 100.290 kb on - strandat 100.290 kb on - strandat 100.340 kb on + strandat 100.340 kb on + strandat 100.340 kb on + strandat 100.341 kb on - strandat 100.341 kb on - strandat 100.341 kb on - strandat 100.341 kb on - strandat 100.341 kb on - strandat 100.344 kb on + strandat 100.344 kb on + strandat 100.344 kb on + strandat 100.344 kb on + strandat 100.344 kb on + strandat 100.345 kb on - strandat 100.345 kb on - strandat 100.345 kb on - strandat 100.345 kb on - strandat 100.345 kb on - strandat 100.345 kb on - strandat 100.453 kb on + strandat 100.453 kb on + strandat 100.454 kb on - strandat 100.618 kb on + strandat 100.633 kb on + strandat 100.711 kb on + strand, within H281DRAFT_06208at 100.823 kb on - strand, within H281DRAFT_06208at 100.840 kb on + strand, within H281DRAFT_06208at 100.898 kb on + strand, within H281DRAFT_06208at 100.898 kb on + strand, within H281DRAFT_06208at 100.898 kb on + strand, within H281DRAFT_06208at 100.899 kb on - strand, within H281DRAFT_06208at 100.900 kb on + strand, within H281DRAFT_06208at 100.908 kb on - strand, within H281DRAFT_06208at 100.908 kb on - strand, within H281DRAFT_06208at 100.909 kb on + strand, within H281DRAFT_06208at 100.910 kb on - strand, within H281DRAFT_06208at 100.910 kb on - strand, within H281DRAFT_06208at 100.929 kb on + strand, within H281DRAFT_06208at 100.929 kb on + strand, within H281DRAFT_06208at 100.930 kb on - strand, within H281DRAFT_06208at 100.933 kb on + strand, within H281DRAFT_06208at 101.021 kb on + strand, within H281DRAFT_06208at 101.022 kb on - strand, within H281DRAFT_06208at 101.023 kb on + strand, within H281DRAFT_06208at 101.024 kb on - strand, within H281DRAFT_06208

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Per-strain Table

Position Strand Gene LocusTag Fraction Sebacic (C)
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98,669 + H281DRAFT_06206 0.63 +0.5
98,669 + H281DRAFT_06206 0.63 -0.6
98,669 + H281DRAFT_06206 0.63 -0.7
98,669 + H281DRAFT_06206 0.63 +0.3
98,670 - H281DRAFT_06206 0.63 +0.5
98,670 - H281DRAFT_06206 0.63 -0.5
98,670 - H281DRAFT_06206 0.63 -0.6
98,775 + H281DRAFT_06206 0.70 -0.6
98,775 + H281DRAFT_06206 0.70 +0.5
98,776 - H281DRAFT_06206 0.70 +1.2
98,776 - H281DRAFT_06206 0.70 -0.4
98,776 - H281DRAFT_06206 0.70 +0.3
98,776 - H281DRAFT_06206 0.70 -1.6
98,776 - +0.2
98,852 + -0.1
98,852 + H281DRAFT_06206 0.75 +0.0
98,853 - +4.2
98,955 + H281DRAFT_06206 0.82 -0.5
98,955 + H281DRAFT_06206 0.82 +0.6
98,959 + H281DRAFT_06206 0.82 +0.5
98,960 - H281DRAFT_06206 0.82 -1.1
99,007 + H281DRAFT_06206 0.85 +1.2
99,008 - H281DRAFT_06206 0.86 +1.3
99,061 + H281DRAFT_06206 0.89 +0.7
99,061 + H281DRAFT_06206 0.89 +1.2
99,180 + +0.3
99,181 - +0.7
99,181 - +0.7
99,197 - +0.0
99,534 - -1.1
99,546 + +1.7
99,547 - -2.3
99,602 + -0.5
99,603 - -1.6
99,603 - +1.0
99,607 + -0.3
99,608 - -1.2
99,630 - +0.8
99,630 - -0.4
99,761 + H281DRAFT_06207 0.17 +0.6
99,762 - H281DRAFT_06207 0.17 +0.5
99,901 + H281DRAFT_06207 0.41 +0.1
99,904 + H281DRAFT_06207 0.42 -0.4
99,953 - H281DRAFT_06207 0.50 -2.4
99,973 + H281DRAFT_06207 0.54 +0.8
100,024 + H281DRAFT_06207 0.63 +0.4
100,025 - H281DRAFT_06207 0.63 +1.1
100,025 - H281DRAFT_06207 0.63 -0.4
100,025 - H281DRAFT_06207 0.63 +0.3
100,025 - H281DRAFT_06207 0.63 +0.2
100,025 - H281DRAFT_06207 0.63 -0.1
100,073 + H281DRAFT_06207 0.71 +0.5
100,074 - H281DRAFT_06207 0.71 +0.1
100,153 - H281DRAFT_06207 0.85 -0.9
100,153 - H281DRAFT_06207 0.85 +0.7
100,166 + H281DRAFT_06207 0.87 +1.4
100,166 + H281DRAFT_06207 0.87 -0.2
100,166 + H281DRAFT_06207 0.87 -1.1
100,176 - H281DRAFT_06207 0.89 -1.0
100,205 + -2.3
100,218 + -0.2
100,290 - +0.2
100,290 - -0.9
100,340 + -0.5
100,340 + -1.6
100,340 + +2.2
100,341 - +0.6
100,341 - +0.1
100,341 - +0.8
100,341 - +1.5
100,341 - +2.9
100,344 + +0.6
100,344 + -0.5
100,344 + -0.9
100,344 + +0.1
100,344 + +0.7
100,345 - +0.6
100,345 - +0.3
100,345 - -0.4
100,345 - +0.6
100,345 - -0.2
100,345 - +0.6
100,453 + +0.3
100,453 + -0.1
100,454 - -0.2
100,618 + +0.6
100,633 + -0.0
100,711 + H281DRAFT_06208 0.11 +0.3
100,823 - H281DRAFT_06208 0.20 +0.9
100,840 + H281DRAFT_06208 0.22 +0.1
100,898 + H281DRAFT_06208 0.27 +0.5
100,898 + H281DRAFT_06208 0.27 +0.0
100,898 + H281DRAFT_06208 0.27 +0.8
100,899 - H281DRAFT_06208 0.27 +0.2
100,900 + H281DRAFT_06208 0.27 -0.1
100,908 - H281DRAFT_06208 0.27 -0.3
100,908 - H281DRAFT_06208 0.27 +1.2
100,909 + H281DRAFT_06208 0.28 -0.4
100,910 - H281DRAFT_06208 0.28 -0.7
100,910 - H281DRAFT_06208 0.28 +0.8
100,929 + H281DRAFT_06208 0.29 -0.2
100,929 + H281DRAFT_06208 0.29 +0.5
100,930 - H281DRAFT_06208 0.29 -0.8
100,933 + H281DRAFT_06208 0.30 -0.5
101,021 + H281DRAFT_06208 0.37 -0.2
101,022 - H281DRAFT_06208 0.37 -0.1
101,023 + H281DRAFT_06208 0.37 +0.1
101,024 - H281DRAFT_06208 0.37 +0.4

Or see this region's nucleotide sequence