Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05902

Experiment: Sebacic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05900 and H281DRAFT_05901 are separated by 29 nucleotidesH281DRAFT_05901 and H281DRAFT_05902 are separated by 151 nucleotidesH281DRAFT_05902 and H281DRAFT_05903 are separated by 129 nucleotidesH281DRAFT_05903 and H281DRAFT_05904 are separated by 265 nucleotides H281DRAFT_05900: H281DRAFT_05900 - HD-GYP domain, at 36,414 to 37,904 _05900 H281DRAFT_05901: H281DRAFT_05901 - Cupin domain-containing protein, at 37,934 to 38,275 _05901 H281DRAFT_05902: H281DRAFT_05902 - 2-Methylisocitrate lyase, PEP mutase family, at 38,427 to 39,275 _05902 H281DRAFT_05903: H281DRAFT_05903 - osmotically inducible protein OsmC, at 39,405 to 39,830 _05903 H281DRAFT_05904: H281DRAFT_05904 - transcriptional regulator, RpiR family, at 40,096 to 40,950 _05904 Position (kb) 38 39 40Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 37.522 kb on + strand, within H281DRAFT_05900at 37.523 kb on - strand, within H281DRAFT_05900at 37.523 kb on - strand, within H281DRAFT_05900at 37.993 kb on - strand, within H281DRAFT_05901at 37.993 kb on - strandat 38.123 kb on + strand, within H281DRAFT_05901at 38.123 kb on + strand, within H281DRAFT_05901at 38.530 kb on - strand, within H281DRAFT_05902at 39.736 kb on + strandat 39.737 kb on - strand, within H281DRAFT_05903

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Per-strain Table

Position Strand Gene LocusTag Fraction Sebacic (C)
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37,522 + H281DRAFT_05900 0.74 +0.1
37,523 - H281DRAFT_05900 0.74 -1.3
37,523 - H281DRAFT_05900 0.74 +0.7
37,993 - H281DRAFT_05901 0.17 -0.0
37,993 - +2.0
38,123 + H281DRAFT_05901 0.55 -0.5
38,123 + H281DRAFT_05901 0.55 -3.0
38,530 - H281DRAFT_05902 0.12 -0.2
39,736 + -0.3
39,737 - H281DRAFT_05903 0.78 +0.4

Or see this region's nucleotide sequence