Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05046

Experiment: Sebacic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05045 and H281DRAFT_05046 are separated by 187 nucleotidesH281DRAFT_05046 and H281DRAFT_05047 are separated by 409 nucleotides H281DRAFT_05045: H281DRAFT_05045 - amidase, at 232,835 to 234,235 _05045 H281DRAFT_05046: H281DRAFT_05046 - Signal transduction histidine kinase, at 234,423 to 235,511 _05046 H281DRAFT_05047: H281DRAFT_05047 - thioredoxin reductase (NADPH), at 235,921 to 237,612 _05047 Position (kb) 234 235 236Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 233.497 kb on + strand, within H281DRAFT_05045at 233.497 kb on + strand, within H281DRAFT_05045at 233.682 kb on + strand, within H281DRAFT_05045at 234.047 kb on + strand, within H281DRAFT_05045at 234.336 kb on + strandat 234.811 kb on + strand, within H281DRAFT_05046at 234.912 kb on + strand, within H281DRAFT_05046at 234.912 kb on + strand, within H281DRAFT_05046at 235.213 kb on + strand, within H281DRAFT_05046at 235.678 kb on + strandat 235.713 kb on + strandat 235.717 kb on + strandat 235.741 kb on + strandat 235.741 kb on + strandat 235.742 kb on - strandat 236.464 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sebacic (C)
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233,497 + H281DRAFT_05045 0.47 +0.9
233,497 + H281DRAFT_05045 0.47 -0.1
233,682 + H281DRAFT_05045 0.60 +0.8
234,047 + H281DRAFT_05045 0.87 -0.4
234,336 + +0.2
234,811 + H281DRAFT_05046 0.36 +0.2
234,912 + H281DRAFT_05046 0.45 -0.2
234,912 + H281DRAFT_05046 0.45 +0.5
235,213 + H281DRAFT_05046 0.73 +0.5
235,678 + -2.9
235,713 + +0.6
235,717 + -0.0
235,741 + +1.8
235,741 + +2.0
235,742 - -1.0
236,464 + +1.1

Or see this region's nucleotide sequence