Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04018

Experiment: Sebacic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04016 and H281DRAFT_04017 are separated by 133 nucleotidesH281DRAFT_04017 and H281DRAFT_04018 are separated by 138 nucleotidesH281DRAFT_04018 and H281DRAFT_04019 are separated by 56 nucleotides H281DRAFT_04016: H281DRAFT_04016 - MFS transporter, DHA1 family, bicyclomycin/chloramphenicol resistance protein, at 117,607 to 118,959 _04016 H281DRAFT_04017: H281DRAFT_04017 - hypothetical protein, at 119,093 to 119,671 _04017 H281DRAFT_04018: H281DRAFT_04018 - glutamate-1-semialdehyde 2,1-aminomutase, at 119,810 to 121,093 _04018 H281DRAFT_04019: H281DRAFT_04019 - diaminohydroxyphosphoribosylaminopyrimidine deaminase, at 121,150 to 122,307 _04019 Position (kb) 119 120 121 122Strain fitness (log2 ratio) -2 -1 0 1 2at 118.876 kb on - strandat 118.907 kb on + strandat 119.072 kb on - strandat 119.072 kb on - strandat 119.072 kb on - strandat 119.288 kb on + strand, within H281DRAFT_04017at 119.289 kb on - strand, within H281DRAFT_04017at 119.307 kb on - strand, within H281DRAFT_04017at 119.307 kb on - strand, within H281DRAFT_04017at 119.363 kb on + strand, within H281DRAFT_04017at 119.364 kb on - strand, within H281DRAFT_04017at 119.364 kb on - strand, within H281DRAFT_04017at 119.726 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sebacic (C)
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118,876 - -0.4
118,907 + +1.8
119,072 - -0.3
119,072 - -0.8
119,072 - +0.6
119,288 + H281DRAFT_04017 0.34 +0.1
119,289 - H281DRAFT_04017 0.34 +0.2
119,307 - H281DRAFT_04017 0.37 -0.2
119,307 - H281DRAFT_04017 0.37 -2.6
119,363 + H281DRAFT_04017 0.47 +0.3
119,364 - H281DRAFT_04017 0.47 -1.3
119,364 - H281DRAFT_04017 0.47 -1.7
119,726 - -1.0

Or see this region's nucleotide sequence