Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03778

Experiment: Sebacic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03776 and H281DRAFT_03777 are separated by 262 nucleotidesH281DRAFT_03777 and H281DRAFT_03778 are separated by 161 nucleotidesH281DRAFT_03778 and H281DRAFT_03779 are separated by 257 nucleotides H281DRAFT_03776: H281DRAFT_03776 - protein of unknown function (DUF4399), at 294,532 to 294,963 _03776 H281DRAFT_03777: H281DRAFT_03777 - hypothetical protein, at 295,226 to 295,504 _03777 H281DRAFT_03778: H281DRAFT_03778 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 295,666 to 297,189 _03778 H281DRAFT_03779: H281DRAFT_03779 - Forkhead associated (FHA) domain, binds pSer, pThr, pTyr, at 297,447 to 300,056 _03779 Position (kb) 295 296 297 298Strain fitness (log2 ratio) -1 0 1at 295.862 kb on - strand, within H281DRAFT_03778at 296.017 kb on - strand, within H281DRAFT_03778at 296.152 kb on + strand, within H281DRAFT_03778at 297.201 kb on - strandat 297.681 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sebacic (C)
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295,862 - H281DRAFT_03778 0.13 +1.1
296,017 - H281DRAFT_03778 0.23 +0.3
296,152 + H281DRAFT_03778 0.32 -0.9
297,201 - -1.2
297,681 + +0.8

Or see this region's nucleotide sequence