Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03710

Experiment: Sebacic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03709 and H281DRAFT_03710 are separated by 71 nucleotidesH281DRAFT_03710 and H281DRAFT_03711 are separated by 2 nucleotides H281DRAFT_03709: H281DRAFT_03709 - Crotonobetainyl-CoA:carnitine CoA-transferase CaiB, at 223,167 to 224,441 _03709 H281DRAFT_03710: H281DRAFT_03710 - Nitrate/nitrite transporter NarK, at 224,513 to 225,820 _03710 H281DRAFT_03711: H281DRAFT_03711 - Predicted metal-dependent hydrolase, TIM-barrel fold, at 225,823 to 226,953 _03711 Position (kb) 224 225 226Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 223.566 kb on + strand, within H281DRAFT_03709at 223.567 kb on - strand, within H281DRAFT_03709at 223.620 kb on + strand, within H281DRAFT_03709at 223.620 kb on + strand, within H281DRAFT_03709at 223.620 kb on + strand, within H281DRAFT_03709at 223.620 kb on + strand, within H281DRAFT_03709at 223.620 kb on + strand, within H281DRAFT_03709at 223.621 kb on - strand, within H281DRAFT_03709at 223.621 kb on - strand, within H281DRAFT_03709at 223.621 kb on - strand, within H281DRAFT_03709at 223.621 kb on - strand, within H281DRAFT_03709at 223.621 kb on - strand, within H281DRAFT_03709at 223.621 kb on - strand, within H281DRAFT_03709at 223.622 kb on + strand, within H281DRAFT_03709at 223.622 kb on + strand, within H281DRAFT_03709at 223.622 kb on + strand, within H281DRAFT_03709at 223.870 kb on - strand, within H281DRAFT_03709at 224.106 kb on + strand, within H281DRAFT_03709at 224.222 kb on + strand, within H281DRAFT_03709at 224.500 kb on + strandat 224.500 kb on + strandat 224.636 kb on + strandat 224.637 kb on - strandat 225.115 kb on - strand, within H281DRAFT_03710at 225.115 kb on - strand, within H281DRAFT_03710at 225.490 kb on + strand, within H281DRAFT_03710at 225.491 kb on - strand, within H281DRAFT_03710at 225.514 kb on - strand, within H281DRAFT_03710at 225.695 kb on + strandat 225.695 kb on + strandat 225.695 kb on + strandat 225.790 kb on - strandat 225.797 kb on + strandat 225.955 kb on + strand, within H281DRAFT_03711at 225.956 kb on - strand, within H281DRAFT_03711at 226.082 kb on - strand, within H281DRAFT_03711at 226.113 kb on + strand, within H281DRAFT_03711at 226.196 kb on - strand, within H281DRAFT_03711at 226.196 kb on - strand, within H281DRAFT_03711at 226.196 kb on - strand, within H281DRAFT_03711at 226.472 kb on - strand, within H281DRAFT_03711at 226.509 kb on - strandat 226.509 kb on - strand, within H281DRAFT_03711at 226.510 kb on + strand, within H281DRAFT_03711at 226.511 kb on - strand, within H281DRAFT_03711at 226.660 kb on + strand, within H281DRAFT_03711at 226.770 kb on + strand, within H281DRAFT_03711at 226.771 kb on - strand, within H281DRAFT_03711at 226.771 kb on - strand, within H281DRAFT_03711at 226.771 kb on - strand, within H281DRAFT_03711at 226.771 kb on - strand, within H281DRAFT_03711

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Per-strain Table

Position Strand Gene LocusTag Fraction Sebacic (C)
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223,566 + H281DRAFT_03709 0.31 +1.3
223,567 - H281DRAFT_03709 0.31 +0.5
223,620 + H281DRAFT_03709 0.36 +2.0
223,620 + H281DRAFT_03709 0.36 +0.5
223,620 + H281DRAFT_03709 0.36 +1.0
223,620 + H281DRAFT_03709 0.36 +0.1
223,620 + H281DRAFT_03709 0.36 +0.8
223,621 - H281DRAFT_03709 0.36 -0.3
223,621 - H281DRAFT_03709 0.36 -1.4
223,621 - H281DRAFT_03709 0.36 -2.4
223,621 - H281DRAFT_03709 0.36 -0.3
223,621 - H281DRAFT_03709 0.36 -0.8
223,621 - H281DRAFT_03709 0.36 -1.8
223,622 + H281DRAFT_03709 0.36 +0.5
223,622 + H281DRAFT_03709 0.36 +0.2
223,622 + H281DRAFT_03709 0.36 +0.5
223,870 - H281DRAFT_03709 0.55 -1.2
224,106 + H281DRAFT_03709 0.74 +1.6
224,222 + H281DRAFT_03709 0.83 +0.1
224,500 + -2.4
224,500 + +0.5
224,636 + -0.5
224,637 - -0.8
225,115 - H281DRAFT_03710 0.46 -0.0
225,115 - H281DRAFT_03710 0.46 -1.5
225,490 + H281DRAFT_03710 0.75 -0.4
225,491 - H281DRAFT_03710 0.75 -0.3
225,514 - H281DRAFT_03710 0.77 -3.2
225,695 + -0.2
225,695 + +0.8
225,695 + -0.2
225,790 - +0.5
225,797 + +0.4
225,955 + H281DRAFT_03711 0.12 +0.2
225,956 - H281DRAFT_03711 0.12 +0.7
226,082 - H281DRAFT_03711 0.23 -0.1
226,113 + H281DRAFT_03711 0.26 -0.1
226,196 - H281DRAFT_03711 0.33 +0.1
226,196 - H281DRAFT_03711 0.33 +1.2
226,196 - H281DRAFT_03711 0.33 -0.5
226,472 - H281DRAFT_03711 0.57 +0.3
226,509 - +1.0
226,509 - H281DRAFT_03711 0.61 +0.4
226,510 + H281DRAFT_03711 0.61 -0.0
226,511 - H281DRAFT_03711 0.61 +0.4
226,660 + H281DRAFT_03711 0.74 -1.3
226,770 + H281DRAFT_03711 0.84 -1.7
226,771 - H281DRAFT_03711 0.84 -2.6
226,771 - H281DRAFT_03711 0.84 -0.8
226,771 - H281DRAFT_03711 0.84 +0.1
226,771 - H281DRAFT_03711 0.84 +0.4

Or see this region's nucleotide sequence