Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03330

Experiment: Sebacic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03328 and H281DRAFT_03329 are separated by 199 nucleotidesH281DRAFT_03329 and H281DRAFT_03330 are separated by 78 nucleotidesH281DRAFT_03330 and H281DRAFT_03331 are separated by 87 nucleotidesH281DRAFT_03331 and H281DRAFT_03332 are separated by 134 nucleotides H281DRAFT_03328: H281DRAFT_03328 - hypothetical protein, at 387,615 to 388,034 _03328 H281DRAFT_03329: H281DRAFT_03329 - hypothetical protein, at 388,234 to 388,491 _03329 H281DRAFT_03330: H281DRAFT_03330 - Uncharacterized conserved protein PhnB, glyoxalase superfamily, at 388,570 to 389,031 _03330 H281DRAFT_03331: H281DRAFT_03331 - membrane-associated protein, at 389,119 to 389,766 _03331 H281DRAFT_03332: H281DRAFT_03332 - Acetyltransferases, at 389,901 to 390,428 _03332 Position (kb) 388 389 390Strain fitness (log2 ratio) -2 -1 0 1 2 3at 387.788 kb on - strand, within H281DRAFT_03328at 387.801 kb on + strand, within H281DRAFT_03328at 387.802 kb on - strand, within H281DRAFT_03328at 388.490 kb on - strandat 388.801 kb on - strand, within H281DRAFT_03330at 389.473 kb on - strand, within H281DRAFT_03331at 389.473 kb on - strand, within H281DRAFT_03331at 389.474 kb on + strandat 389.475 kb on - strand, within H281DRAFT_03331at 389.475 kb on - strand, within H281DRAFT_03331at 389.681 kb on + strand, within H281DRAFT_03331at 389.681 kb on + strand, within H281DRAFT_03331at 389.692 kb on - strand, within H281DRAFT_03331

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Per-strain Table

Position Strand Gene LocusTag Fraction Sebacic (C)
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387,788 - H281DRAFT_03328 0.41 +0.1
387,801 + H281DRAFT_03328 0.44 -2.6
387,802 - H281DRAFT_03328 0.45 -1.2
388,490 - -0.1
388,801 - H281DRAFT_03330 0.50 +0.6
389,473 - H281DRAFT_03331 0.55 -1.4
389,473 - H281DRAFT_03331 0.55 +0.6
389,474 + +0.5
389,475 - H281DRAFT_03331 0.55 -0.4
389,475 - H281DRAFT_03331 0.55 +2.0
389,681 + H281DRAFT_03331 0.87 +2.9
389,681 + H281DRAFT_03331 0.87 +0.8
389,692 - H281DRAFT_03331 0.88 +0.5

Or see this region's nucleotide sequence