Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03289

Experiment: Sebacic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03288 and H281DRAFT_03289 are separated by 56 nucleotidesH281DRAFT_03289 and H281DRAFT_03290 are separated by 64 nucleotidesH281DRAFT_03290 and H281DRAFT_03291 are separated by 142 nucleotides H281DRAFT_03288: H281DRAFT_03288 - ATP-binding cassette, subfamily B, at 346,888 to 349,575 _03288 H281DRAFT_03289: H281DRAFT_03289 - Glycosyltransferase, GT2 family, at 349,632 to 350,579 _03289 H281DRAFT_03290: H281DRAFT_03290 - N-acetylglucosaminyl deacetylase, LmbE family, at 350,644 to 351,339 _03290 H281DRAFT_03291: H281DRAFT_03291 - phosphatidylserine decarboxylase, at 351,482 to 352,726 _03291 Position (kb) 349 350 351Strain fitness (log2 ratio) -2 -1 0 1 2at 348.988 kb on + strand, within H281DRAFT_03288at 348.990 kb on + strand, within H281DRAFT_03288at 348.991 kb on - strand, within H281DRAFT_03288at 349.461 kb on + strandat 349.987 kb on + strand, within H281DRAFT_03289at 350.118 kb on - strand, within H281DRAFT_03289at 350.323 kb on + strand, within H281DRAFT_03289

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Per-strain Table

Position Strand Gene LocusTag Fraction Sebacic (C)
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348,988 + H281DRAFT_03288 0.78 -2.2
348,990 + H281DRAFT_03288 0.78 -0.7
348,991 - H281DRAFT_03288 0.78 -0.1
349,461 + -0.6
349,987 + H281DRAFT_03289 0.37 +0.3
350,118 - H281DRAFT_03289 0.51 +2.3
350,323 + H281DRAFT_03289 0.73 -1.0

Or see this region's nucleotide sequence