Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03094

Experiment: Sebacic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03092 and H281DRAFT_03093 are separated by 63 nucleotidesH281DRAFT_03093 and H281DRAFT_03094 are separated by 86 nucleotidesH281DRAFT_03094 and H281DRAFT_03095 are separated by 110 nucleotides H281DRAFT_03092: H281DRAFT_03092 - Transglutaminase-like enzyme, putative cysteine protease, at 125,873 to 126,763 _03092 H281DRAFT_03093: H281DRAFT_03093 - transcriptional regulator, MarR family, at 126,827 to 127,249 _03093 H281DRAFT_03094: H281DRAFT_03094 - transcriptional regulator, MarR family, at 127,336 to 127,755 _03094 H281DRAFT_03095: H281DRAFT_03095 - membrane fusion protein, multidrug efflux system, at 127,866 to 128,993 _03095 Position (kb) 127 128Strain fitness (log2 ratio) -2 -1 0 1at 126.374 kb on + strand, within H281DRAFT_03092at 126.400 kb on + strand, within H281DRAFT_03092at 127.103 kb on + strandat 127.271 kb on + strandat 127.272 kb on - strandat 127.272 kb on - strandat 127.301 kb on - strandat 127.387 kb on + strand, within H281DRAFT_03094at 127.875 kb on - strandat 128.382 kb on - strand, within H281DRAFT_03095at 128.455 kb on + strand, within H281DRAFT_03095at 128.456 kb on - strand, within H281DRAFT_03095

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Per-strain Table

Position Strand Gene LocusTag Fraction Sebacic (C)
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126,374 + H281DRAFT_03092 0.56 -0.7
126,400 + H281DRAFT_03092 0.59 -0.3
127,103 + -0.4
127,271 + -0.1
127,272 - -0.8
127,272 - -0.3
127,301 - +0.5
127,387 + H281DRAFT_03094 0.12 +1.6
127,875 - -0.6
128,382 - H281DRAFT_03095 0.46 -0.3
128,455 + H281DRAFT_03095 0.52 +0.8
128,456 - H281DRAFT_03095 0.52 -2.1

Or see this region's nucleotide sequence