Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03083

Experiment: Sebacic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03082 and H281DRAFT_03083 are separated by 93 nucleotidesH281DRAFT_03083 and H281DRAFT_03084 are separated by 348 nucleotides H281DRAFT_03082: H281DRAFT_03082 - transcriptional regulator, LysR family, at 111,216 to 112,130 _03082 H281DRAFT_03083: H281DRAFT_03083 - Redoxin, at 112,224 to 112,775 _03083 H281DRAFT_03084: H281DRAFT_03084 - Cytochrome c biogenesis protein CcdA, at 113,124 to 114,920 _03084 Position (kb) 112 113Strain fitness (log2 ratio) -2 -1 0 1 2at 111.301 kb on + strandat 111.301 kb on + strandat 111.301 kb on + strandat 111.301 kb on + strandat 111.425 kb on + strand, within H281DRAFT_03082at 111.425 kb on + strand, within H281DRAFT_03082at 111.426 kb on - strand, within H281DRAFT_03082at 111.541 kb on - strand, within H281DRAFT_03082at 111.541 kb on - strand, within H281DRAFT_03082at 112.349 kb on + strand, within H281DRAFT_03083at 112.551 kb on - strandat 112.558 kb on + strand, within H281DRAFT_03083at 112.559 kb on - strand, within H281DRAFT_03083at 112.559 kb on - strand, within H281DRAFT_03083at 112.559 kb on - strand, within H281DRAFT_03083at 112.559 kb on - strand, within H281DRAFT_03083at 112.791 kb on + strandat 113.062 kb on + strandat 113.063 kb on - strandat 113.134 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sebacic (C)
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111,301 + +0.0
111,301 + +0.1
111,301 + -2.5
111,301 + +0.6
111,425 + H281DRAFT_03082 0.23 +0.4
111,425 + H281DRAFT_03082 0.23 +0.1
111,426 - H281DRAFT_03082 0.23 +1.1
111,541 - H281DRAFT_03082 0.36 +0.1
111,541 - H281DRAFT_03082 0.36 +0.3
112,349 + H281DRAFT_03083 0.23 +0.6
112,551 - +2.4
112,558 + H281DRAFT_03083 0.61 -0.6
112,559 - H281DRAFT_03083 0.61 +0.7
112,559 - H281DRAFT_03083 0.61 -1.6
112,559 - H281DRAFT_03083 0.61 -0.1
112,559 - H281DRAFT_03083 0.61 +1.2
112,791 + -0.4
113,062 + +0.8
113,063 - -2.3
113,134 + +1.0

Or see this region's nucleotide sequence