Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02727

Experiment: Sebacic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02726 and H281DRAFT_02727 are separated by 176 nucleotidesH281DRAFT_02727 and H281DRAFT_02728 are separated by 11 nucleotides H281DRAFT_02726: H281DRAFT_02726 - Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase, at 311,668 to 313,116 _02726 H281DRAFT_02727: H281DRAFT_02727 - transcriptional regulator, LysR family, at 313,293 to 314,216 _02727 H281DRAFT_02728: H281DRAFT_02728 - Uncharacterized conserved protein, DUF1501 family, at 314,228 to 315,376 _02728 Position (kb) 313 314 315Strain fitness (log2 ratio) -1 0 1at 312.365 kb on - strand, within H281DRAFT_02726at 312.496 kb on + strand, within H281DRAFT_02726at 312.846 kb on - strand, within H281DRAFT_02726at 313.026 kb on + strandat 313.104 kb on + strandat 313.104 kb on + strandat 313.231 kb on - strandat 313.314 kb on + strandat 313.315 kb on - strandat 313.459 kb on + strand, within H281DRAFT_02727at 313.727 kb on - strand, within H281DRAFT_02727at 313.959 kb on + strand, within H281DRAFT_02727at 313.960 kb on - strand, within H281DRAFT_02727at 314.229 kb on + strandat 314.874 kb on + strand, within H281DRAFT_02728

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Per-strain Table

Position Strand Gene LocusTag Fraction Sebacic (C)
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312,365 - H281DRAFT_02726 0.48 +0.8
312,496 + H281DRAFT_02726 0.57 +1.1
312,846 - H281DRAFT_02726 0.81 +0.0
313,026 + -0.5
313,104 + +1.1
313,104 + +0.8
313,231 - -0.8
313,314 + -1.3
313,315 - +0.4
313,459 + H281DRAFT_02727 0.18 -0.1
313,727 - H281DRAFT_02727 0.47 +0.6
313,959 + H281DRAFT_02727 0.72 +0.2
313,960 - H281DRAFT_02727 0.72 +0.0
314,229 + -0.9
314,874 + H281DRAFT_02728 0.56 +1.0

Or see this region's nucleotide sequence