Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02708

Experiment: Sebacic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02707 and H281DRAFT_02708 are separated by 16 nucleotidesH281DRAFT_02708 and H281DRAFT_02709 are separated by 50 nucleotides H281DRAFT_02707: H281DRAFT_02707 - methylthioribose-1-phosphate isomerase (EC 5.3.1.23), at 290,382 to 291,461 _02707 H281DRAFT_02708: H281DRAFT_02708 - 5'-methylthioribose kinase, at 291,478 to 292,746 _02708 H281DRAFT_02709: H281DRAFT_02709 - GntR family transcriptional regulator, at 292,797 to 293,645 _02709 Position (kb) 291 292 293Strain fitness (log2 ratio) -2 -1 0 1at 290.642 kb on - strand, within H281DRAFT_02707at 291.262 kb on - strand, within H281DRAFT_02707at 291.262 kb on - strand, within H281DRAFT_02707at 291.262 kb on - strand, within H281DRAFT_02707at 291.700 kb on - strand, within H281DRAFT_02708at 291.926 kb on + strand, within H281DRAFT_02708at 292.111 kb on - strand, within H281DRAFT_02708at 292.207 kb on + strand, within H281DRAFT_02708at 292.323 kb on - strand, within H281DRAFT_02708at 292.443 kb on - strand, within H281DRAFT_02708at 292.844 kb on - strandat 292.983 kb on - strand, within H281DRAFT_02709at 293.087 kb on - strand, within H281DRAFT_02709at 293.204 kb on + strand, within H281DRAFT_02709

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Per-strain Table

Position Strand Gene LocusTag Fraction Sebacic (C)
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290,642 - H281DRAFT_02707 0.24 +0.5
291,262 - H281DRAFT_02707 0.81 -0.5
291,262 - H281DRAFT_02707 0.81 +0.2
291,262 - H281DRAFT_02707 0.81 +0.5
291,700 - H281DRAFT_02708 0.17 +1.0
291,926 + H281DRAFT_02708 0.35 +1.1
292,111 - H281DRAFT_02708 0.50 +1.5
292,207 + H281DRAFT_02708 0.57 +1.6
292,323 - H281DRAFT_02708 0.67 +0.1
292,443 - H281DRAFT_02708 0.76 +0.9
292,844 - +0.9
292,983 - H281DRAFT_02709 0.22 +0.2
293,087 - H281DRAFT_02709 0.34 -0.2
293,204 + H281DRAFT_02709 0.48 -2.2

Or see this region's nucleotide sequence