Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02352

Experiment: Sebacic (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_02349 and H281DRAFT_02350 overlap by 23 nucleotidesH281DRAFT_02350 and H281DRAFT_02351 are separated by 1 nucleotidesH281DRAFT_02351 and H281DRAFT_02352 are separated by 98 nucleotidesH281DRAFT_02352 and H281DRAFT_02353 are separated by 148 nucleotidesH281DRAFT_02353 and H281DRAFT_02354 are separated by 94 nucleotides H281DRAFT_02349: H281DRAFT_02349 - general secretion pathway protein J, at 507,968 to 508,645 _02349 H281DRAFT_02350: H281DRAFT_02350 - general secretion pathway protein I, at 508,623 to 509,036 _02350 H281DRAFT_02351: H281DRAFT_02351 - general secretion pathway protein H, at 509,038 to 509,520 _02351 H281DRAFT_02352: H281DRAFT_02352 - general secretion pathway protein G, at 509,619 to 510,083 _02352 H281DRAFT_02353: H281DRAFT_02353 - general secretion pathway protein C, at 510,232 to 510,654 _02353 H281DRAFT_02354: H281DRAFT_02354 - general secretion pathway protein F, at 510,749 to 511,966 _02354 Position (kb) 509 510 511Strain fitness (log2 ratio) -3 -2 -1 0 1at 508.823 kb on + strandat 508.823 kb on + strand, within H281DRAFT_02350at 508.823 kb on + strand, within H281DRAFT_02350at 508.823 kb on + strandat 508.824 kb on - strand, within H281DRAFT_02350at 508.824 kb on - strand, within H281DRAFT_02350at 508.824 kb on - strand, within H281DRAFT_02350at 508.911 kb on + strand, within H281DRAFT_02350at 509.143 kb on + strand, within H281DRAFT_02351at 509.144 kb on - strand, within H281DRAFT_02351at 509.144 kb on - strand, within H281DRAFT_02351at 509.620 kb on + strandat 509.728 kb on + strand, within H281DRAFT_02352at 509.872 kb on + strand, within H281DRAFT_02352at 510.017 kb on + strand, within H281DRAFT_02352at 510.017 kb on + strand, within H281DRAFT_02352at 510.083 kb on + strandat 510.083 kb on + strandat 510.084 kb on - strandat 510.084 kb on - strandat 510.092 kb on - strandat 510.175 kb on + strandat 510.175 kb on + strandat 510.175 kb on + strandat 510.176 kb on - strandat 510.176 kb on - strandat 510.176 kb on - strandat 510.221 kb on + strandat 510.221 kb on + strandat 510.221 kb on + strandat 510.222 kb on - strandat 510.222 kb on - strandat 510.228 kb on + strandat 510.228 kb on + strandat 510.229 kb on - strandat 510.229 kb on - strandat 510.229 kb on - strandat 510.608 kb on + strandat 510.643 kb on + strandat 510.644 kb on - strandat 510.644 kb on - strandat 510.644 kb on - strandat 510.832 kb on + strandat 510.833 kb on - strandat 510.833 kb on - strandat 510.985 kb on + strand, within H281DRAFT_02354at 510.986 kb on - strand, within H281DRAFT_02354at 510.986 kb on - strand, within H281DRAFT_02354

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Sebacic (C)
remove
508,823 + +1.6
508,823 + H281DRAFT_02350 0.48 +0.8
508,823 + H281DRAFT_02350 0.48 +1.4
508,823 + +0.1
508,824 - H281DRAFT_02350 0.49 +1.0
508,824 - H281DRAFT_02350 0.49 -0.0
508,824 - H281DRAFT_02350 0.49 -0.1
508,911 + H281DRAFT_02350 0.70 +0.9
509,143 + H281DRAFT_02351 0.22 +0.4
509,144 - H281DRAFT_02351 0.22 -0.5
509,144 - H281DRAFT_02351 0.22 +0.1
509,620 + +1.0
509,728 + H281DRAFT_02352 0.23 +0.7
509,872 + H281DRAFT_02352 0.54 +0.5
510,017 + H281DRAFT_02352 0.86 +0.5
510,017 + H281DRAFT_02352 0.86 +0.2
510,083 + -0.3
510,083 + -3.2
510,084 - +0.8
510,084 - +0.1
510,092 - -2.1
510,175 + -0.0
510,175 + -0.8
510,175 + -1.2
510,176 - +0.8
510,176 - +0.5
510,176 - -1.5
510,221 + +0.1
510,221 + -2.2
510,221 + +1.1
510,222 - +0.3
510,222 - -1.2
510,228 + +0.9
510,228 + -1.2
510,229 - +0.3
510,229 - +1.0
510,229 - +0.6
510,608 + -0.2
510,643 + -1.6
510,644 - -0.8
510,644 - -2.6
510,644 - -0.7
510,832 + +0.2
510,833 - -0.3
510,833 - -0.3
510,985 + H281DRAFT_02354 0.19 -0.6
510,986 - H281DRAFT_02354 0.19 -0.2
510,986 - H281DRAFT_02354 0.19 +0.0

Or see this region's nucleotide sequence