Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02244

Experiment: Sebacic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02242 and H281DRAFT_02243 are separated by 67 nucleotidesH281DRAFT_02243 and H281DRAFT_02244 are separated by 249 nucleotidesH281DRAFT_02244 and H281DRAFT_02245 are separated by 156 nucleotides H281DRAFT_02242: H281DRAFT_02242 - DNA protecting protein DprA, at 386,698 to 387,960 _02242 H281DRAFT_02243: H281DRAFT_02243 - Thiol-disulfide isomerase or thioredoxin, at 388,028 to 388,405 _02243 H281DRAFT_02244: H281DRAFT_02244 - DNA topoisomerase-3, at 388,655 to 391,324 _02244 H281DRAFT_02245: H281DRAFT_02245 - transcriptional regulator, LysR family, at 391,481 to 392,584 _02245 Position (kb) 388 389 390 391 392Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 387.810 kb on - strand, within H281DRAFT_02242at 387.810 kb on - strand, within H281DRAFT_02242at 387.835 kb on + strandat 387.836 kb on - strandat 387.842 kb on + strandat 387.843 kb on - strandat 387.845 kb on + strandat 387.845 kb on + strandat 387.845 kb on + strandat 387.845 kb on + strandat 387.846 kb on - strandat 387.907 kb on + strandat 387.908 kb on - strandat 387.984 kb on + strandat 387.984 kb on + strandat 387.984 kb on + strandat 387.984 kb on + strandat 387.984 kb on + strandat 387.984 kb on + strandat 387.984 kb on + strandat 387.985 kb on - strandat 387.985 kb on - strandat 387.985 kb on - strandat 387.985 kb on - strandat 387.985 kb on - strandat 388.423 kb on + strandat 388.423 kb on + strandat 388.635 kb on + strandat 388.635 kb on + strandat 388.635 kb on + strandat 388.635 kb on + strandat 388.635 kb on + strandat 388.635 kb on + strandat 388.635 kb on + strandat 388.636 kb on - strandat 388.636 kb on - strandat 388.636 kb on - strandat 388.636 kb on - strandat 391.309 kb on + strandat 391.388 kb on + strandat 391.449 kb on + strandat 391.482 kb on + strandat 391.804 kb on - strand, within H281DRAFT_02245at 391.857 kb on + strand, within H281DRAFT_02245at 391.858 kb on - strand, within H281DRAFT_02245at 391.972 kb on + strand, within H281DRAFT_02245at 391.977 kb on - strand, within H281DRAFT_02245at 391.995 kb on + strand, within H281DRAFT_02245at 391.995 kb on + strand, within H281DRAFT_02245at 391.995 kb on + strand, within H281DRAFT_02245at 391.995 kb on + strand, within H281DRAFT_02245at 391.996 kb on - strand, within H281DRAFT_02245at 392.070 kb on + strand, within H281DRAFT_02245at 392.244 kb on + strand, within H281DRAFT_02245at 392.244 kb on + strand, within H281DRAFT_02245at 392.245 kb on - strand, within H281DRAFT_02245at 392.309 kb on - strand, within H281DRAFT_02245

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Per-strain Table

Position Strand Gene LocusTag Fraction Sebacic (C)
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387,810 - H281DRAFT_02242 0.88 +0.6
387,810 - H281DRAFT_02242 0.88 -0.6
387,835 + -1.0
387,836 - -0.8
387,842 + +0.9
387,843 - +0.4
387,845 + +0.4
387,845 + +0.6
387,845 + +0.3
387,845 + +0.1
387,846 - -0.3
387,907 + -1.3
387,908 - -0.5
387,984 + -2.4
387,984 + -1.1
387,984 + +1.2
387,984 + -0.1
387,984 + +0.4
387,984 + -2.2
387,984 + -1.1
387,985 - +0.9
387,985 - -0.5
387,985 - -0.3
387,985 - +0.1
387,985 - +0.5
388,423 + +1.4
388,423 + -2.0
388,635 + +0.5
388,635 + -0.1
388,635 + -1.5
388,635 + +0.9
388,635 + +0.1
388,635 + -1.9
388,635 + -0.0
388,636 - +1.5
388,636 - -1.8
388,636 - -0.6
388,636 - -1.5
391,309 + +1.0
391,388 + -0.8
391,449 + -1.3
391,482 + -0.9
391,804 - H281DRAFT_02245 0.29 +0.1
391,857 + H281DRAFT_02245 0.34 -2.8
391,858 - H281DRAFT_02245 0.34 -1.7
391,972 + H281DRAFT_02245 0.44 -2.8
391,977 - H281DRAFT_02245 0.45 -3.1
391,995 + H281DRAFT_02245 0.47 -3.0
391,995 + H281DRAFT_02245 0.47 -1.1
391,995 + H281DRAFT_02245 0.47 -0.9
391,995 + H281DRAFT_02245 0.47 -2.5
391,996 - H281DRAFT_02245 0.47 -2.0
392,070 + H281DRAFT_02245 0.53 -0.9
392,244 + H281DRAFT_02245 0.69 -4.4
392,244 + H281DRAFT_02245 0.69 -1.4
392,245 - H281DRAFT_02245 0.69 -4.8
392,309 - H281DRAFT_02245 0.75 -0.8

Or see this region's nucleotide sequence