Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02116

Experiment: Sebacic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02115 and H281DRAFT_02116 are separated by 259 nucleotidesH281DRAFT_02116 and H281DRAFT_02117 overlap by 4 nucleotides H281DRAFT_02115: H281DRAFT_02115 - diguanylate cyclase/phosphodiesterase, at 243,916 to 245,772 _02115 H281DRAFT_02116: H281DRAFT_02116 - transcriptional regulator, LacI family, at 246,032 to 247,018 _02116 H281DRAFT_02117: H281DRAFT_02117 - Mannose or cellobiose epimerase, N-acyl-D-glucosamine 2-epimerase family, at 247,015 to 248,298 _02117 Position (kb) 246 247 248Strain fitness (log2 ratio) -3 -2 -1 0 1at 245.062 kb on + strand, within H281DRAFT_02115at 245.101 kb on + strand, within H281DRAFT_02115at 245.170 kb on + strand, within H281DRAFT_02115at 245.254 kb on + strand, within H281DRAFT_02115at 245.254 kb on + strand, within H281DRAFT_02115at 245.254 kb on + strand, within H281DRAFT_02115at 245.254 kb on + strand, within H281DRAFT_02115at 245.255 kb on - strand, within H281DRAFT_02115at 245.255 kb on - strand, within H281DRAFT_02115at 245.255 kb on - strand, within H281DRAFT_02115at 245.255 kb on - strand, within H281DRAFT_02115at 245.264 kb on - strand, within H281DRAFT_02115at 245.302 kb on + strand, within H281DRAFT_02115at 245.327 kb on + strand, within H281DRAFT_02115at 245.328 kb on - strand, within H281DRAFT_02115at 245.466 kb on - strand, within H281DRAFT_02115at 245.466 kb on - strand, within H281DRAFT_02115at 245.491 kb on + strand, within H281DRAFT_02115at 245.588 kb on + strandat 245.588 kb on + strandat 245.588 kb on + strandat 245.626 kb on + strandat 245.629 kb on - strandat 245.629 kb on - strandat 245.629 kb on - strandat 245.928 kb on - strandat 245.948 kb on + strandat 245.973 kb on - strandat 246.168 kb on - strand, within H281DRAFT_02116at 246.318 kb on + strand, within H281DRAFT_02116at 246.378 kb on + strand, within H281DRAFT_02116at 246.379 kb on - strand, within H281DRAFT_02116at 246.636 kb on + strand, within H281DRAFT_02116at 247.130 kb on - strandat 247.247 kb on - strand, within H281DRAFT_02117at 247.352 kb on - strand, within H281DRAFT_02117at 247.414 kb on + strand, within H281DRAFT_02117at 247.582 kb on + strand, within H281DRAFT_02117at 247.657 kb on + strand, within H281DRAFT_02117at 247.658 kb on - strand, within H281DRAFT_02117at 247.768 kb on + strand, within H281DRAFT_02117at 247.769 kb on - strand, within H281DRAFT_02117at 247.769 kb on - strand, within H281DRAFT_02117at 247.769 kb on - strand, within H281DRAFT_02117at 247.864 kb on + strand, within H281DRAFT_02117at 247.954 kb on + strand, within H281DRAFT_02117at 247.957 kb on + strand, within H281DRAFT_02117at 247.958 kb on - strand, within H281DRAFT_02117at 248.000 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sebacic (C)
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245,062 + H281DRAFT_02115 0.62 +0.2
245,101 + H281DRAFT_02115 0.64 +0.2
245,170 + H281DRAFT_02115 0.68 +1.0
245,254 + H281DRAFT_02115 0.72 +0.7
245,254 + H281DRAFT_02115 0.72 -0.3
245,254 + H281DRAFT_02115 0.72 +0.1
245,254 + H281DRAFT_02115 0.72 +0.8
245,255 - H281DRAFT_02115 0.72 +0.6
245,255 - H281DRAFT_02115 0.72 -1.6
245,255 - H281DRAFT_02115 0.72 -0.9
245,255 - H281DRAFT_02115 0.72 -2.8
245,264 - H281DRAFT_02115 0.73 -2.1
245,302 + H281DRAFT_02115 0.75 +0.1
245,327 + H281DRAFT_02115 0.76 +0.7
245,328 - H281DRAFT_02115 0.76 -0.3
245,466 - H281DRAFT_02115 0.83 +0.2
245,466 - H281DRAFT_02115 0.83 -0.5
245,491 + H281DRAFT_02115 0.85 +0.1
245,588 + -0.9
245,588 + +0.4
245,588 + +0.3
245,626 + -0.5
245,629 - -0.2
245,629 - -1.2
245,629 - +0.3
245,928 - -0.1
245,948 + -1.4
245,973 - -0.1
246,168 - H281DRAFT_02116 0.14 +0.8
246,318 + H281DRAFT_02116 0.29 +0.1
246,378 + H281DRAFT_02116 0.35 +1.5
246,379 - H281DRAFT_02116 0.35 -1.0
246,636 + H281DRAFT_02116 0.61 +1.3
247,130 - +0.5
247,247 - H281DRAFT_02117 0.18 +1.3
247,352 - H281DRAFT_02117 0.26 +1.3
247,414 + H281DRAFT_02117 0.31 -0.5
247,582 + H281DRAFT_02117 0.44 -2.0
247,657 + H281DRAFT_02117 0.50 +0.4
247,658 - H281DRAFT_02117 0.50 +0.7
247,768 + H281DRAFT_02117 0.59 +0.8
247,769 - H281DRAFT_02117 0.59 +0.8
247,769 - H281DRAFT_02117 0.59 +0.3
247,769 - H281DRAFT_02117 0.59 -2.0
247,864 + H281DRAFT_02117 0.66 -2.4
247,954 + H281DRAFT_02117 0.73 +0.7
247,957 + H281DRAFT_02117 0.73 +0.7
247,958 - H281DRAFT_02117 0.73 +0.7
248,000 - +1.1

Or see this region's nucleotide sequence