Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01229

Experiment: Sebacic (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_01228 and H281DRAFT_01229 are separated by 50 nucleotidesH281DRAFT_01229 and H281DRAFT_01230 are separated by 113 nucleotides H281DRAFT_01228: H281DRAFT_01228 - L-rhamnonate dehydratase, at 65,898 to 67,076 _01228 H281DRAFT_01229: H281DRAFT_01229 - Sugar phosphate permease, at 67,127 to 68,452 _01229 H281DRAFT_01230: H281DRAFT_01230 - 3-oxoacyl-[acyl-carrier protein] reductase, at 68,566 to 69,318 _01230 Position (kb) 67 68 69Strain fitness (log2 ratio) -1 0 1 2at 66.440 kb on - strand, within H281DRAFT_01228at 66.602 kb on - strand, within H281DRAFT_01228at 66.637 kb on - strand, within H281DRAFT_01228at 66.708 kb on - strand, within H281DRAFT_01228at 66.749 kb on - strand, within H281DRAFT_01228at 66.751 kb on + strand, within H281DRAFT_01228at 66.752 kb on - strand, within H281DRAFT_01228at 67.298 kb on - strand, within H281DRAFT_01229at 67.695 kb on + strand, within H281DRAFT_01229at 68.571 kb on - strandat 68.705 kb on + strand, within H281DRAFT_01230at 68.705 kb on + strand, within H281DRAFT_01230at 68.818 kb on + strand, within H281DRAFT_01230at 68.975 kb on - strand, within H281DRAFT_01230at 69.362 kb on - strandat 69.395 kb on + strandat 69.397 kb on + strandat 69.397 kb on + strandat 69.398 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Sebacic (C)
remove
66,440 - H281DRAFT_01228 0.46 +0.4
66,602 - H281DRAFT_01228 0.60 -1.3
66,637 - H281DRAFT_01228 0.63 +0.3
66,708 - H281DRAFT_01228 0.69 +0.1
66,749 - H281DRAFT_01228 0.72 +0.1
66,751 + H281DRAFT_01228 0.72 +0.1
66,752 - H281DRAFT_01228 0.72 +0.6
67,298 - H281DRAFT_01229 0.13 +2.1
67,695 + H281DRAFT_01229 0.43 -0.2
68,571 - +1.1
68,705 + H281DRAFT_01230 0.18 +0.1
68,705 + H281DRAFT_01230 0.18 -0.2
68,818 + H281DRAFT_01230 0.33 -0.2
68,975 - H281DRAFT_01230 0.54 -0.6
69,362 - -1.5
69,395 + -0.2
69,397 + -0.4
69,397 + -0.7
69,398 - -0.2

Or see this region's nucleotide sequence