Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00827

Experiment: Sebacic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00826 and H281DRAFT_00827 overlap by 4 nucleotidesH281DRAFT_00827 and H281DRAFT_00828 are separated by 182 nucleotides H281DRAFT_00826: H281DRAFT_00826 - Arabinose efflux permease, at 915,568 to 917,124 _00826 H281DRAFT_00827: H281DRAFT_00827 - transcriptional regulator, MerR family, at 917,121 to 917,729 _00827 H281DRAFT_00828: H281DRAFT_00828 - transcription termination factor Rho, at 917,912 to 919,180 _00828 Position (kb) 917 918Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 916.130 kb on + strand, within H281DRAFT_00826at 916.130 kb on + strand, within H281DRAFT_00826at 916.130 kb on + strand, within H281DRAFT_00826at 916.235 kb on + strand, within H281DRAFT_00826at 916.236 kb on - strand, within H281DRAFT_00826at 916.239 kb on + strand, within H281DRAFT_00826at 916.239 kb on + strand, within H281DRAFT_00826at 916.257 kb on - strand, within H281DRAFT_00826at 916.259 kb on + strand, within H281DRAFT_00826at 916.260 kb on - strand, within H281DRAFT_00826at 916.263 kb on - strand, within H281DRAFT_00826at 916.263 kb on - strand, within H281DRAFT_00826at 916.263 kb on - strand, within H281DRAFT_00826at 916.263 kb on - strand, within H281DRAFT_00826at 916.263 kb on - strand, within H281DRAFT_00826at 916.271 kb on + strand, within H281DRAFT_00826at 916.271 kb on + strand, within H281DRAFT_00826at 916.272 kb on - strand, within H281DRAFT_00826at 916.272 kb on - strand, within H281DRAFT_00826at 916.546 kb on + strand, within H281DRAFT_00826at 916.587 kb on + strand, within H281DRAFT_00826at 916.841 kb on + strand, within H281DRAFT_00826at 916.842 kb on - strand, within H281DRAFT_00826at 916.991 kb on + strandat 916.991 kb on + strandat 916.991 kb on + strandat 916.992 kb on - strandat 917.027 kb on + strandat 917.028 kb on - strandat 917.065 kb on + strandat 917.065 kb on + strandat 917.065 kb on + strandat 917.066 kb on - strandat 917.066 kb on - strandat 917.210 kb on + strand, within H281DRAFT_00827at 917.211 kb on - strand, within H281DRAFT_00827at 917.577 kb on + strand, within H281DRAFT_00827at 917.577 kb on + strand, within H281DRAFT_00827at 917.594 kb on - strand, within H281DRAFT_00827at 917.650 kb on + strand, within H281DRAFT_00827at 917.888 kb on + strandat 917.889 kb on - strandat 917.913 kb on + strandat 917.914 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sebacic (C)
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916,130 + H281DRAFT_00826 0.36 +2.9
916,130 + H281DRAFT_00826 0.36 +2.6
916,130 + H281DRAFT_00826 0.36 +1.4
916,235 + H281DRAFT_00826 0.43 +2.3
916,236 - H281DRAFT_00826 0.43 +2.9
916,239 + H281DRAFT_00826 0.43 +2.7
916,239 + H281DRAFT_00826 0.43 +2.0
916,257 - H281DRAFT_00826 0.44 +2.5
916,259 + H281DRAFT_00826 0.44 +2.3
916,260 - H281DRAFT_00826 0.44 +2.0
916,263 - H281DRAFT_00826 0.45 +2.2
916,263 - H281DRAFT_00826 0.45 +2.7
916,263 - H281DRAFT_00826 0.45 +2.3
916,263 - H281DRAFT_00826 0.45 +2.0
916,263 - H281DRAFT_00826 0.45 +2.6
916,271 + H281DRAFT_00826 0.45 +2.5
916,271 + H281DRAFT_00826 0.45 +2.5
916,272 - H281DRAFT_00826 0.45 +2.4
916,272 - H281DRAFT_00826 0.45 +2.9
916,546 + H281DRAFT_00826 0.63 +2.6
916,587 + H281DRAFT_00826 0.65 +2.2
916,841 + H281DRAFT_00826 0.82 +2.7
916,842 - H281DRAFT_00826 0.82 +2.5
916,991 + +2.1
916,991 + +2.4
916,991 + +1.9
916,992 - +2.8
917,027 + +3.2
917,028 - +2.6
917,065 + +2.6
917,065 + +2.4
917,065 + +2.6
917,066 - +1.4
917,066 - +2.1
917,210 + H281DRAFT_00827 0.15 +2.0
917,211 - H281DRAFT_00827 0.15 +2.2
917,577 + H281DRAFT_00827 0.75 +2.0
917,577 + H281DRAFT_00827 0.75 +2.0
917,594 - H281DRAFT_00827 0.78 +1.8
917,650 + H281DRAFT_00827 0.87 +2.6
917,888 + -0.3
917,889 - -1.2
917,913 + -0.2
917,914 - -4.4

Or see this region's nucleotide sequence