Experiment: Sebacic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00418 and H281DRAFT_00419 are separated by 47 nucleotides H281DRAFT_00419 and H281DRAFT_00420 are separated by 227 nucleotides H281DRAFT_00420 and H281DRAFT_00421 are separated by 367 nucleotides H281DRAFT_00421 and H281DRAFT_00422 are separated by 101 nucleotides
H281DRAFT_00418: H281DRAFT_00418 - putative spermidine/putrescine transport system substrate-binding protein, at 459,129 to 460,208
_00418
H281DRAFT_00419: H281DRAFT_00419 - transcriptional regulator, LacI family, at 460,256 to 461,323
_00419
H281DRAFT_00420: H281DRAFT_00420 - tRNA_Leu_TAA, at 461,551 to 461,635
_00420
H281DRAFT_00421: H281DRAFT_00421 - hypothetical protein, at 462,003 to 462,206
_00421
H281DRAFT_00422: H281DRAFT_00422 - hypothetical protein, at 462,308 to 462,418
_00422
Position (kb) 460
461
462 Strain fitness (log2 ratio) -1
0
1
2 at 459.386 kb on - strand, within H281DRAFT_00418 at 459.683 kb on - strand, within H281DRAFT_00418 at 459.788 kb on - strand, within H281DRAFT_00418 at 460.896 kb on + strand, within H281DRAFT_00419 at 460.897 kb on - strand, within H281DRAFT_00419 at 460.897 kb on - strand, within H281DRAFT_00419 at 461.341 kb on - strand at 461.853 kb on + strand at 461.970 kb on + strand at 461.970 kb on + strand at 461.970 kb on + strand at 461.971 kb on - strand at 461.971 kb on - strand at 462.083 kb on - strand, within H281DRAFT_00421 at 462.216 kb on - strand at 462.245 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sebacic (C) remove 459,386 - H281DRAFT_00418 0.24 -1.6 459,683 - H281DRAFT_00418 0.51 +0.0 459,788 - H281DRAFT_00418 0.61 -0.4 460,896 + H281DRAFT_00419 0.60 +0.4 460,897 - H281DRAFT_00419 0.60 +0.2 460,897 - H281DRAFT_00419 0.60 +1.6 461,341 - +0.4 461,853 + -0.2 461,970 + +0.4 461,970 + +1.9 461,970 + +0.6 461,971 - +0.5 461,971 - +0.6 462,083 - H281DRAFT_00421 0.39 +1.5 462,216 - -0.3 462,245 - -0.5
Or see this region's nucleotide sequence