Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00357

Experiment: Sebacic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00356 and H281DRAFT_00357 are separated by 43 nucleotidesH281DRAFT_00357 and H281DRAFT_00358 are separated by 217 nucleotides H281DRAFT_00356: H281DRAFT_00356 - acetolactate synthase, large subunit, at 388,873 to 390,738 _00356 H281DRAFT_00357: H281DRAFT_00357 - transcriptional regulator, ArsR family, at 390,782 to 391,081 _00357 H281DRAFT_00358: H281DRAFT_00358 - Aldo/keto reductase, at 391,299 to 392,237 _00358 Position (kb) 390 391 392Strain fitness (log2 ratio) -2 -1 0 1at 390.050 kb on - strand, within H281DRAFT_00356at 390.422 kb on - strand, within H281DRAFT_00356at 390.432 kb on + strand, within H281DRAFT_00356at 390.624 kb on - strandat 390.624 kb on - strandat 390.806 kb on - strandat 391.151 kb on - strandat 391.719 kb on + strand, within H281DRAFT_00358at 391.719 kb on + strand, within H281DRAFT_00358at 391.720 kb on - strand, within H281DRAFT_00358at 391.720 kb on - strand, within H281DRAFT_00358at 391.795 kb on + strand, within H281DRAFT_00358

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Per-strain Table

Position Strand Gene LocusTag Fraction Sebacic (C)
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390,050 - H281DRAFT_00356 0.63 -2.1
390,422 - H281DRAFT_00356 0.83 +0.7
390,432 + H281DRAFT_00356 0.84 +1.3
390,624 - -0.5
390,624 - +1.6
390,806 - -1.0
391,151 - +0.6
391,719 + H281DRAFT_00358 0.45 +0.5
391,719 + H281DRAFT_00358 0.45 -0.5
391,720 - H281DRAFT_00358 0.45 -0.5
391,720 - H281DRAFT_00358 0.45 +0.9
391,795 + H281DRAFT_00358 0.53 -0.3

Or see this region's nucleotide sequence