Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00301

Experiment: Sebacic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00300 and H281DRAFT_00301 are separated by 187 nucleotidesH281DRAFT_00301 and H281DRAFT_00302 are separated by 154 nucleotidesH281DRAFT_00302 and H281DRAFT_00303 are separated by 240 nucleotides H281DRAFT_00300: H281DRAFT_00300 - 6-phosphogluconolactonase, at 320,277 to 321,581 _00300 H281DRAFT_00301: H281DRAFT_00301 - DNA translocase FtsK, at 321,769 to 325,794 _00301 H281DRAFT_00302: H281DRAFT_00302 - Heat shock protein, at 325,949 to 326,488 _00302 H281DRAFT_00303: H281DRAFT_00303 - formate-dependent phosphoribosylglycinamide formyltransferase, at 326,729 to 327,952 _00303 Position (kb) 321 322 323 324 325 326Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 320.778 kb on + strand, within H281DRAFT_00300at 320.778 kb on + strand, within H281DRAFT_00300at 320.779 kb on - strand, within H281DRAFT_00300at 320.805 kb on + strand, within H281DRAFT_00300at 320.805 kb on + strand, within H281DRAFT_00300at 320.805 kb on + strand, within H281DRAFT_00300at 320.806 kb on - strand, within H281DRAFT_00300at 320.992 kb on - strand, within H281DRAFT_00300at 321.027 kb on + strand, within H281DRAFT_00300at 321.027 kb on + strand, within H281DRAFT_00300at 321.027 kb on + strand, within H281DRAFT_00300at 321.027 kb on + strand, within H281DRAFT_00300at 321.028 kb on - strand, within H281DRAFT_00300at 321.028 kb on - strand, within H281DRAFT_00300at 321.087 kb on + strand, within H281DRAFT_00300at 321.087 kb on + strand, within H281DRAFT_00300at 321.087 kb on + strand, within H281DRAFT_00300at 321.088 kb on - strand, within H281DRAFT_00300at 321.089 kb on + strand, within H281DRAFT_00300at 321.090 kb on - strand, within H281DRAFT_00300at 321.153 kb on + strand, within H281DRAFT_00300at 321.195 kb on + strand, within H281DRAFT_00300at 321.196 kb on - strand, within H281DRAFT_00300at 321.307 kb on - strand, within H281DRAFT_00300at 321.307 kb on - strand, within H281DRAFT_00300at 321.307 kb on - strand, within H281DRAFT_00300at 321.480 kb on + strandat 321.480 kb on + strandat 321.480 kb on + strandat 321.480 kb on + strandat 321.601 kb on - strandat 321.648 kb on + strandat 321.649 kb on - strandat 321.649 kb on - strandat 321.700 kb on + strandat 321.701 kb on - strandat 321.701 kb on - strandat 321.873 kb on + strandat 321.873 kb on + strandat 321.875 kb on + strandat 321.876 kb on - strandat 322.074 kb on - strandat 322.665 kb on - strand, within H281DRAFT_00301at 322.731 kb on - strand, within H281DRAFT_00301at 323.528 kb on - strand, within H281DRAFT_00301at 323.554 kb on - strand, within H281DRAFT_00301at 323.598 kb on + strand, within H281DRAFT_00301at 323.598 kb on + strand, within H281DRAFT_00301at 323.598 kb on + strand, within H281DRAFT_00301at 323.598 kb on + strand, within H281DRAFT_00301at 323.598 kb on + strand, within H281DRAFT_00301at 323.599 kb on - strand, within H281DRAFT_00301at 323.716 kb on - strand, within H281DRAFT_00301at 323.716 kb on - strand, within H281DRAFT_00301at 324.106 kb on + strand, within H281DRAFT_00301at 324.159 kb on + strand, within H281DRAFT_00301at 324.160 kb on - strand, within H281DRAFT_00301at 324.404 kb on + strand, within H281DRAFT_00301at 324.405 kb on - strand, within H281DRAFT_00301at 324.614 kb on + strand, within H281DRAFT_00301at 325.546 kb on - strandat 325.735 kb on + strandat 325.735 kb on + strandat 325.784 kb on - strandat 325.784 kb on - strandat 325.794 kb on + strandat 325.884 kb on + strandat 325.884 kb on + strandat 325.884 kb on + strandat 325.884 kb on + strandat 325.885 kb on - strandat 325.885 kb on - strandat 325.885 kb on - strandat 325.885 kb on - strandat 325.951 kb on - strandat 325.951 kb on - strandat 325.973 kb on + strandat 325.974 kb on - strandat 326.064 kb on + strand, within H281DRAFT_00302at 326.147 kb on + strand, within H281DRAFT_00302at 326.165 kb on - strand, within H281DRAFT_00302at 326.166 kb on + strand, within H281DRAFT_00302at 326.166 kb on + strand, within H281DRAFT_00302at 326.166 kb on + strand, within H281DRAFT_00302at 326.167 kb on - strand, within H281DRAFT_00302at 326.167 kb on - strand, within H281DRAFT_00302at 326.322 kb on - strand, within H281DRAFT_00302at 326.322 kb on - strand, within H281DRAFT_00302

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Per-strain Table

Position Strand Gene LocusTag Fraction Sebacic (C)
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320,778 + H281DRAFT_00300 0.38 -0.1
320,778 + H281DRAFT_00300 0.38 +1.3
320,779 - H281DRAFT_00300 0.38 -0.6
320,805 + H281DRAFT_00300 0.40 -0.2
320,805 + H281DRAFT_00300 0.40 +0.2
320,805 + H281DRAFT_00300 0.40 -2.8
320,806 - H281DRAFT_00300 0.41 +0.2
320,992 - H281DRAFT_00300 0.55 -0.1
321,027 + H281DRAFT_00300 0.57 -0.5
321,027 + H281DRAFT_00300 0.57 +0.7
321,027 + H281DRAFT_00300 0.57 -0.9
321,027 + H281DRAFT_00300 0.57 -2.0
321,028 - H281DRAFT_00300 0.58 +0.1
321,028 - H281DRAFT_00300 0.58 +1.1
321,087 + H281DRAFT_00300 0.62 -1.0
321,087 + H281DRAFT_00300 0.62 -0.3
321,087 + H281DRAFT_00300 0.62 +0.8
321,088 - H281DRAFT_00300 0.62 +0.2
321,089 + H281DRAFT_00300 0.62 -0.8
321,090 - H281DRAFT_00300 0.62 +0.8
321,153 + H281DRAFT_00300 0.67 +0.7
321,195 + H281DRAFT_00300 0.70 +0.9
321,196 - H281DRAFT_00300 0.70 +0.3
321,307 - H281DRAFT_00300 0.79 -0.6
321,307 - H281DRAFT_00300 0.79 -0.4
321,307 - H281DRAFT_00300 0.79 +2.5
321,480 + +0.5
321,480 + +0.0
321,480 + -0.1
321,480 + -0.5
321,601 - -1.8
321,648 + -1.5
321,649 - -0.2
321,649 - -0.6
321,700 + -3.5
321,701 - +0.8
321,701 - +1.0
321,873 + +1.2
321,873 + +0.1
321,875 + +0.2
321,876 - -0.1
322,074 - +0.9
322,665 - H281DRAFT_00301 0.22 +0.5
322,731 - H281DRAFT_00301 0.24 +0.6
323,528 - H281DRAFT_00301 0.44 -0.8
323,554 - H281DRAFT_00301 0.44 -0.4
323,598 + H281DRAFT_00301 0.45 +0.4
323,598 + H281DRAFT_00301 0.45 -0.3
323,598 + H281DRAFT_00301 0.45 -0.1
323,598 + H281DRAFT_00301 0.45 +0.4
323,598 + H281DRAFT_00301 0.45 +0.3
323,599 - H281DRAFT_00301 0.45 -0.2
323,716 - H281DRAFT_00301 0.48 -0.2
323,716 - H281DRAFT_00301 0.48 +1.1
324,106 + H281DRAFT_00301 0.58 -1.8
324,159 + H281DRAFT_00301 0.59 +0.8
324,160 - H281DRAFT_00301 0.59 -0.3
324,404 + H281DRAFT_00301 0.65 -0.9
324,405 - H281DRAFT_00301 0.65 -0.3
324,614 + H281DRAFT_00301 0.71 -0.3
325,546 - -3.6
325,735 + -3.5
325,735 + +0.9
325,784 - -0.0
325,784 - -1.2
325,794 + -1.7
325,884 + -0.1
325,884 + -0.7
325,884 + -1.5
325,884 + -0.1
325,885 - +1.4
325,885 - +2.1
325,885 - +1.0
325,885 - -0.3
325,951 - -0.3
325,951 - +0.6
325,973 + +1.9
325,974 - +2.2
326,064 + H281DRAFT_00302 0.21 +0.8
326,147 + H281DRAFT_00302 0.37 -1.1
326,165 - H281DRAFT_00302 0.40 -2.1
326,166 + H281DRAFT_00302 0.40 +1.1
326,166 + H281DRAFT_00302 0.40 -2.7
326,166 + H281DRAFT_00302 0.40 +0.4
326,167 - H281DRAFT_00302 0.40 +0.2
326,167 - H281DRAFT_00302 0.40 +2.0
326,322 - H281DRAFT_00302 0.69 +1.4
326,322 - H281DRAFT_00302 0.69 +0.7

Or see this region's nucleotide sequence