Experiment: m.b. Phosphomycin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3957 and HP15_3958 are separated by 76 nucleotides HP15_3958 and HP15_3959 are separated by 29 nucleotides HP15_3959 and HP15_3960 are separated by 63 nucleotides HP15_3960 and HP15_3961 are separated by 217 nucleotides
HP15_3957: HP15_3957 - endoribonuclease L-PSP family protein, at 4,188,126 to 4,188,476
_3957
HP15_3958: HP15_3958 - rhodanese domain protein, at 4,188,553 to 4,189,401
_3958
HP15_3959: HP15_3959 - cytochrome B561, at 4,189,431 to 4,189,955
_3959
HP15_3960: HP15_3960 - secreted protein, at 4,190,019 to 4,190,372
_3960
HP15_3961: HP15_3961 - two-component transcriptional regulator, winged helix family, at 4,190,590 to 4,191,315
_3961
Position (kb) 4189
4190 Strain fitness (log2 ratio) -2
-1
0
1 at 4188.698 kb on + strand, within HP15_3958 at 4188.781 kb on - strand, within HP15_3958 at 4188.889 kb on - strand, within HP15_3958 at 4188.923 kb on + strand, within HP15_3958 at 4188.944 kb on - strand, within HP15_3958 at 4188.957 kb on + strand, within HP15_3958 at 4188.957 kb on + strand, within HP15_3958 at 4188.957 kb on + strand, within HP15_3958 at 4188.957 kb on + strand, within HP15_3958 at 4189.089 kb on + strand, within HP15_3958 at 4189.101 kb on + strand, within HP15_3958 at 4189.103 kb on + strand, within HP15_3958 at 4189.123 kb on - strand, within HP15_3958 at 4189.128 kb on - strand, within HP15_3958 at 4189.173 kb on + strand, within HP15_3958 at 4189.181 kb on - strand, within HP15_3958 at 4189.181 kb on - strand, within HP15_3958 at 4189.187 kb on + strand, within HP15_3958 at 4189.218 kb on + strand, within HP15_3958 at 4189.218 kb on + strand, within HP15_3958 at 4189.253 kb on - strand, within HP15_3958 at 4189.253 kb on - strand, within HP15_3958 at 4189.336 kb on - strand at 4189.353 kb on - strand at 4189.403 kb on - strand at 4189.428 kb on - strand at 4189.524 kb on + strand, within HP15_3959 at 4189.564 kb on - strand, within HP15_3959 at 4189.564 kb on - strand, within HP15_3959 at 4189.584 kb on + strand, within HP15_3959 at 4189.688 kb on + strand, within HP15_3959 at 4189.701 kb on - strand, within HP15_3959 at 4189.757 kb on - strand, within HP15_3959 at 4189.766 kb on + strand, within HP15_3959 at 4189.790 kb on + strand, within HP15_3959 at 4189.917 kb on - strand at 4189.924 kb on + strand at 4190.022 kb on + strand at 4190.055 kb on - strand, within HP15_3960 at 4190.328 kb on - strand, within HP15_3960 at 4190.398 kb on - strand at 4190.467 kb on + strand at 4190.475 kb on - strand at 4190.487 kb on - strand at 4190.557 kb on + strand at 4190.644 kb on - strand at 4190.751 kb on + strand, within HP15_3961 at 4190.797 kb on - strand, within HP15_3961 at 4190.829 kb on + strand, within HP15_3961 at 4190.911 kb on - strand, within HP15_3961 at 4190.951 kb on + strand, within HP15_3961
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Phosphomycin 1 mg/ml remove 4,188,698 + HP15_3958 0.17 +0.5 4,188,781 - HP15_3958 0.27 +0.3 4,188,889 - HP15_3958 0.40 -0.1 4,188,923 + HP15_3958 0.44 +0.0 4,188,944 - HP15_3958 0.46 -0.4 4,188,957 + HP15_3958 0.48 +0.3 4,188,957 + HP15_3958 0.48 -0.4 4,188,957 + HP15_3958 0.48 +0.1 4,188,957 + HP15_3958 0.48 -0.0 4,189,089 + HP15_3958 0.63 -0.2 4,189,101 + HP15_3958 0.65 +0.0 4,189,103 + HP15_3958 0.65 +0.1 4,189,123 - HP15_3958 0.67 +0.1 4,189,128 - HP15_3958 0.68 -0.0 4,189,173 + HP15_3958 0.73 +0.1 4,189,181 - HP15_3958 0.74 -0.2 4,189,181 - HP15_3958 0.74 +0.3 4,189,187 + HP15_3958 0.75 -1.2 4,189,218 + HP15_3958 0.78 -0.1 4,189,218 + HP15_3958 0.78 -0.2 4,189,253 - HP15_3958 0.82 +0.1 4,189,253 - HP15_3958 0.82 +0.4 4,189,336 - -0.1 4,189,353 - +0.6 4,189,403 - -1.8 4,189,428 - -0.1 4,189,524 + HP15_3959 0.18 -0.4 4,189,564 - HP15_3959 0.25 -0.8 4,189,564 - HP15_3959 0.25 -0.7 4,189,584 + HP15_3959 0.29 +0.6 4,189,688 + HP15_3959 0.49 -1.0 4,189,701 - HP15_3959 0.51 -0.1 4,189,757 - HP15_3959 0.62 +0.0 4,189,766 + HP15_3959 0.64 -0.1 4,189,790 + HP15_3959 0.68 -0.8 4,189,917 - -0.1 4,189,924 + -0.0 4,190,022 + -0.6 4,190,055 - HP15_3960 0.10 -0.2 4,190,328 - HP15_3960 0.87 -0.2 4,190,398 - -0.1 4,190,467 + -0.3 4,190,475 - -0.1 4,190,487 - -0.1 4,190,557 + -0.1 4,190,644 - +0.2 4,190,751 + HP15_3961 0.22 -0.1 4,190,797 - HP15_3961 0.29 +0.1 4,190,829 + HP15_3961 0.33 +0.2 4,190,911 - HP15_3961 0.44 -1.3 4,190,951 + HP15_3961 0.50 -0.3
Or see this region's nucleotide sequence