Experiment: m.b. Phosphomycin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3715 and HP15_3716 are separated by 18 nucleotides HP15_3716 and HP15_3717 are separated by 77 nucleotides HP15_3717 and HP15_3718 are separated by 83 nucleotides HP15_3718 and HP15_3719 are separated by 5 nucleotides
HP15_3715: HP15_3715 - short-chain dehydrogenase/reductase SDR, at 3,931,016 to 3,931,801
_3715
HP15_3716: HP15_3716 - conserved hypothetical protein, at 3,931,820 to 3,932,110
_3716
HP15_3717: HP15_3717 - conserved hypothetical protein, at 3,932,188 to 3,932,619
_3717
HP15_3718: HP15_3718 - conserved hypothetical protein, secreted, at 3,932,703 to 3,933,143
_3718
HP15_3719: HP15_3719 - short-chain dehydrogenase/reductase SDR, at 3,933,149 to 3,933,856
_3719
Position (kb)
3932
3933 Strain fitness (log2 ratio)
-2
-1
0
1 at 3931.193 kb on - strand, within HP15_3715 at 3931.270 kb on - strand, within HP15_3715 at 3931.272 kb on + strand, within HP15_3715 at 3931.277 kb on + strand, within HP15_3715 at 3931.285 kb on - strand, within HP15_3715 at 3931.308 kb on + strand, within HP15_3715 at 3931.308 kb on + strand, within HP15_3715 at 3931.316 kb on - strand, within HP15_3715 at 3931.341 kb on - strand, within HP15_3715 at 3931.441 kb on + strand, within HP15_3715 at 3931.503 kb on - strand, within HP15_3715 at 3931.525 kb on + strand, within HP15_3715 at 3931.534 kb on - strand, within HP15_3715 at 3931.573 kb on + strand, within HP15_3715 at 3931.587 kb on - strand, within HP15_3715 at 3931.625 kb on + strand, within HP15_3715 at 3931.688 kb on - strand, within HP15_3715 at 3931.748 kb on + strand at 3931.809 kb on - strand at 3931.878 kb on + strand, within HP15_3716 at 3931.886 kb on - strand, within HP15_3716 at 3931.989 kb on + strand, within HP15_3716 at 3932.030 kb on - strand, within HP15_3716 at 3932.134 kb on - strand at 3932.193 kb on - strand at 3932.195 kb on + strand at 3932.195 kb on + strand at 3932.212 kb on + strand at 3932.241 kb on - strand, within HP15_3717 at 3932.345 kb on - strand, within HP15_3717 at 3932.378 kb on + strand, within HP15_3717 at 3932.427 kb on + strand, within HP15_3717 at 3932.521 kb on + strand, within HP15_3717 at 3932.524 kb on - strand, within HP15_3717 at 3932.529 kb on - strand, within HP15_3717 at 3932.572 kb on - strand, within HP15_3717 at 3932.652 kb on + strand at 3932.652 kb on + strand at 3932.660 kb on - strand at 3932.660 kb on - strand at 3932.660 kb on - strand at 3932.687 kb on + strand at 3932.772 kb on + strand, within HP15_3718 at 3932.824 kb on + strand, within HP15_3718 at 3932.824 kb on + strand, within HP15_3718 at 3932.832 kb on - strand, within HP15_3718 at 3932.832 kb on - strand, within HP15_3718 at 3932.868 kb on + strand, within HP15_3718 at 3932.868 kb on + strand, within HP15_3718 at 3932.873 kb on + strand, within HP15_3718 at 3932.873 kb on + strand, within HP15_3718 at 3932.876 kb on - strand, within HP15_3718 at 3932.881 kb on - strand, within HP15_3718 at 3932.881 kb on - strand, within HP15_3718 at 3932.897 kb on - strand, within HP15_3718 at 3932.919 kb on + strand, within HP15_3718 at 3932.927 kb on - strand, within HP15_3718 at 3932.963 kb on + strand, within HP15_3718 at 3932.983 kb on + strand, within HP15_3718 at 3933.016 kb on + strand, within HP15_3718 at 3933.083 kb on + strand, within HP15_3718 at 3933.390 kb on - strand, within HP15_3719 at 3933.391 kb on - strand, within HP15_3719 at 3933.392 kb on + strand, within HP15_3719 at 3933.397 kb on + strand, within HP15_3719 at 3933.445 kb on - strand, within HP15_3719 at 3933.466 kb on + strand, within HP15_3719 at 3933.488 kb on + strand, within HP15_3719
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Phosphomycin 1 mg/ml remove 3,931,193 - HP15_3715 0.23 +0.6 3,931,270 - HP15_3715 0.32 +0.2 3,931,272 + HP15_3715 0.33 -0.1 3,931,277 + HP15_3715 0.33 +0.4 3,931,285 - HP15_3715 0.34 +0.0 3,931,308 + HP15_3715 0.37 +0.3 3,931,308 + HP15_3715 0.37 -0.2 3,931,316 - HP15_3715 0.38 +0.1 3,931,341 - HP15_3715 0.41 +0.5 3,931,441 + HP15_3715 0.54 +0.5 3,931,503 - HP15_3715 0.62 +1.6 3,931,525 + HP15_3715 0.65 +1.1 3,931,534 - HP15_3715 0.66 -0.0 3,931,573 + HP15_3715 0.71 +0.8 3,931,587 - HP15_3715 0.73 +0.9 3,931,625 + HP15_3715 0.77 -0.9 3,931,688 - HP15_3715 0.85 +0.7 3,931,748 + +0.1 3,931,809 - -0.1 3,931,878 + HP15_3716 0.20 +0.1 3,931,886 - HP15_3716 0.23 -0.3 3,931,989 + HP15_3716 0.58 +0.4 3,932,030 - HP15_3716 0.72 -0.1 3,932,134 - -0.1 3,932,193 - +0.4 3,932,195 + -0.1 3,932,195 + -0.2 3,932,212 + +0.1 3,932,241 - HP15_3717 0.12 -0.1 3,932,345 - HP15_3717 0.36 +0.1 3,932,378 + HP15_3717 0.44 +0.4 3,932,427 + HP15_3717 0.55 +0.2 3,932,521 + HP15_3717 0.77 -1.0 3,932,524 - HP15_3717 0.78 +0.4 3,932,529 - HP15_3717 0.79 -0.0 3,932,572 - HP15_3717 0.89 +0.6 3,932,652 + -0.4 3,932,652 + -0.1 3,932,660 - -0.2 3,932,660 - +0.1 3,932,660 - +0.2 3,932,687 + -0.0 3,932,772 + HP15_3718 0.16 +0.4 3,932,824 + HP15_3718 0.27 -0.4 3,932,824 + HP15_3718 0.27 -1.0 3,932,832 - HP15_3718 0.29 -0.4 3,932,832 - HP15_3718 0.29 -0.1 3,932,868 + HP15_3718 0.37 -0.9 3,932,868 + HP15_3718 0.37 +0.0 3,932,873 + HP15_3718 0.39 +0.3 3,932,873 + HP15_3718 0.39 +0.0 3,932,876 - HP15_3718 0.39 +0.8 3,932,881 - HP15_3718 0.40 -0.1 3,932,881 - HP15_3718 0.40 -1.8 3,932,897 - HP15_3718 0.44 +0.8 3,932,919 + HP15_3718 0.49 +0.0 3,932,927 - HP15_3718 0.51 -0.2 3,932,963 + HP15_3718 0.59 +0.1 3,932,983 + HP15_3718 0.63 -0.5 3,933,016 + HP15_3718 0.71 +0.0 3,933,083 + HP15_3718 0.86 +0.9 3,933,390 - HP15_3719 0.34 +1.0 3,933,391 - HP15_3719 0.34 -0.9 3,933,392 + HP15_3719 0.34 +0.1 3,933,397 + HP15_3719 0.35 +0.1 3,933,445 - HP15_3719 0.42 -0.2 3,933,466 + HP15_3719 0.45 -0.2 3,933,488 + HP15_3719 0.48 -0.4
Or see this region's nucleotide sequence