Experiment: m.b. Phosphomycin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3643 and HP15_3644 are separated by 949 nucleotides HP15_3644 and HP15_3645 are separated by 83 nucleotides HP15_3645 and HP15_3646 are separated by 96 nucleotides
HP15_3643: HP15_3643 - restriction endonuclease, at 3,836,325 to 3,836,990
_3643
HP15_3644: HP15_3644 - conserved hypothetical protein, secreted, at 3,837,940 to 3,838,212
_3644
HP15_3645: HP15_3645 - hypothetical protein, at 3,838,296 to 3,838,901
_3645
HP15_3646: HP15_3646 - hypothetical protein, at 3,838,998 to 3,839,264
_3646
Position (kb)
3837
3838
3839 Strain fitness (log2 ratio)
-1
0
1
2 at 3837.037 kb on + strand at 3837.064 kb on + strand at 3837.067 kb on - strand at 3837.182 kb on + strand at 3837.184 kb on + strand at 3837.225 kb on - strand at 3837.278 kb on + strand at 3837.403 kb on + strand at 3837.432 kb on - strand at 3837.581 kb on - strand at 3837.591 kb on - strand at 3837.608 kb on - strand at 3837.668 kb on - strand at 3837.719 kb on + strand at 3837.793 kb on + strand at 3837.832 kb on - strand at 3837.849 kb on + strand at 3837.897 kb on + strand at 3837.915 kb on + strand at 3837.985 kb on + strand, within HP15_3644 at 3837.993 kb on - strand, within HP15_3644 at 3837.993 kb on - strand, within HP15_3644 at 3838.100 kb on + strand, within HP15_3644 at 3838.214 kb on + strand at 3838.214 kb on + strand at 3838.222 kb on - strand at 3838.266 kb on - strand at 3838.295 kb on + strand at 3838.380 kb on + strand at 3838.535 kb on + strand, within HP15_3645 at 3838.535 kb on + strand, within HP15_3645 at 3838.540 kb on + strand, within HP15_3645 at 3838.611 kb on + strand, within HP15_3645 at 3838.626 kb on + strand, within HP15_3645 at 3838.626 kb on - strand, within HP15_3645 at 3838.648 kb on + strand, within HP15_3645 at 3838.677 kb on - strand, within HP15_3645 at 3838.723 kb on + strand, within HP15_3645 at 3838.769 kb on - strand, within HP15_3645 at 3838.802 kb on + strand, within HP15_3645 at 3838.809 kb on + strand, within HP15_3645 at 3838.814 kb on + strand, within HP15_3645 at 3838.821 kb on - strand, within HP15_3645 at 3838.821 kb on - strand, within HP15_3645 at 3838.919 kb on + strand at 3838.951 kb on - strand at 3838.996 kb on + strand at 3838.996 kb on + strand at 3839.004 kb on - strand at 3839.029 kb on - strand, within HP15_3646 at 3839.071 kb on - strand, within HP15_3646
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Phosphomycin 1 mg/ml remove 3,837,037 + +1.7 3,837,064 + -0.1 3,837,067 - +0.0 3,837,182 + -0.1 3,837,184 + +1.8 3,837,225 - -0.2 3,837,278 + -0.4 3,837,403 + +0.1 3,837,432 - +0.0 3,837,581 - -0.1 3,837,591 - +0.1 3,837,608 - +0.5 3,837,668 - -0.1 3,837,719 + +0.3 3,837,793 + -0.0 3,837,832 - +0.1 3,837,849 + -0.2 3,837,897 + +0.1 3,837,915 + -0.6 3,837,985 + HP15_3644 0.16 -0.9 3,837,993 - HP15_3644 0.19 -0.6 3,837,993 - HP15_3644 0.19 -0.6 3,838,100 + HP15_3644 0.59 -0.1 3,838,214 + +0.1 3,838,214 + -0.6 3,838,222 - +0.5 3,838,266 - -0.1 3,838,295 + -0.0 3,838,380 + +0.7 3,838,535 + HP15_3645 0.39 -0.8 3,838,535 + HP15_3645 0.39 -1.3 3,838,540 + HP15_3645 0.40 -0.4 3,838,611 + HP15_3645 0.52 +0.5 3,838,626 + HP15_3645 0.54 +0.1 3,838,626 - HP15_3645 0.54 +0.3 3,838,648 + HP15_3645 0.58 -0.8 3,838,677 - HP15_3645 0.63 -0.2 3,838,723 + HP15_3645 0.70 +0.7 3,838,769 - HP15_3645 0.78 +0.6 3,838,802 + HP15_3645 0.83 -1.1 3,838,809 + HP15_3645 0.85 +0.8 3,838,814 + HP15_3645 0.85 +0.0 3,838,821 - HP15_3645 0.87 -0.0 3,838,821 - HP15_3645 0.87 -0.3 3,838,919 + +0.0 3,838,951 - -0.1 3,838,996 + -1.0 3,838,996 + -0.2 3,839,004 - +0.1 3,839,029 - HP15_3646 0.12 +0.4 3,839,071 - HP15_3646 0.27 -0.5
Or see this region's nucleotide sequence