Experiment: m.b. Phosphomycin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3443 and HP15_3444 are separated by 95 nucleotides HP15_3444 and HP15_3445 are separated by 48 nucleotides HP15_3445 and HP15_3446 overlap by 4 nucleotides
HP15_3443: HP15_3443 - transglycosylase-associated-like protein, at 3,621,960 to 3,622,202
_3443
HP15_3444: HP15_3444 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 3,622,298 to 3,622,996
_3444
HP15_3445: HP15_3445 - sortase family protein, at 3,623,045 to 3,623,635
_3445
HP15_3446: HP15_3446 - protein containing a von Willebrand factor type A (vWA) domain, at 3,623,632 to 3,625,746
_3446
Position (kb)
3623
3624 Strain fitness (log2 ratio)
-1
0
1 at 3622.222 kb on - strand at 3622.280 kb on + strand at 3622.280 kb on - strand at 3622.280 kb on - strand at 3622.280 kb on - strand at 3622.366 kb on - strand at 3622.388 kb on - strand, within HP15_3444 at 3622.423 kb on + strand, within HP15_3444 at 3622.574 kb on - strand, within HP15_3444 at 3622.575 kb on - strand, within HP15_3444 at 3622.631 kb on + strand, within HP15_3444 at 3622.679 kb on - strand, within HP15_3444 at 3622.689 kb on - strand, within HP15_3444 at 3622.703 kb on - strand, within HP15_3444 at 3622.826 kb on + strand, within HP15_3444 at 3622.836 kb on - strand, within HP15_3444 at 3623.108 kb on + strand, within HP15_3445 at 3623.145 kb on + strand, within HP15_3445 at 3623.146 kb on + strand, within HP15_3445 at 3623.164 kb on + strand, within HP15_3445 at 3623.190 kb on + strand, within HP15_3445 at 3623.195 kb on + strand, within HP15_3445 at 3623.198 kb on - strand, within HP15_3445 at 3623.229 kb on + strand, within HP15_3445 at 3623.246 kb on - strand, within HP15_3445 at 3623.259 kb on + strand, within HP15_3445 at 3623.259 kb on + strand, within HP15_3445 at 3623.259 kb on + strand, within HP15_3445 at 3623.259 kb on + strand, within HP15_3445 at 3623.267 kb on - strand, within HP15_3445 at 3623.267 kb on - strand, within HP15_3445 at 3623.299 kb on + strand, within HP15_3445 at 3623.309 kb on + strand, within HP15_3445 at 3623.417 kb on - strand, within HP15_3445 at 3623.430 kb on + strand, within HP15_3445 at 3623.588 kb on + strand at 3623.593 kb on + strand at 3623.727 kb on + strand at 3623.802 kb on + strand at 3623.802 kb on + strand at 3623.810 kb on - strand at 3623.853 kb on - strand, within HP15_3446 at 3623.874 kb on - strand, within HP15_3446 at 3623.897 kb on - strand, within HP15_3446 at 3624.000 kb on + strand, within HP15_3446 at 3624.009 kb on + strand, within HP15_3446 at 3624.331 kb on - strand, within HP15_3446 at 3624.423 kb on + strand, within HP15_3446 at 3624.423 kb on + strand, within HP15_3446 at 3624.423 kb on + strand, within HP15_3446 at 3624.431 kb on - strand, within HP15_3446 at 3624.461 kb on + strand, within HP15_3446 at 3624.602 kb on + strand, within HP15_3446 at 3624.603 kb on + strand, within HP15_3446 at 3624.603 kb on + strand, within HP15_3446 at 3624.610 kb on - strand, within HP15_3446 at 3624.631 kb on + strand, within HP15_3446
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Phosphomycin 1 mg/ml remove 3,622,222 - -0.0 3,622,280 + -0.2 3,622,280 - -0.3 3,622,280 - -0.6 3,622,280 - -0.2 3,622,366 - +0.0 3,622,388 - HP15_3444 0.13 -0.4 3,622,423 + HP15_3444 0.18 -0.0 3,622,574 - HP15_3444 0.39 +0.0 3,622,575 - HP15_3444 0.40 -0.3 3,622,631 + HP15_3444 0.48 +0.2 3,622,679 - HP15_3444 0.55 -0.8 3,622,689 - HP15_3444 0.56 -0.4 3,622,703 - HP15_3444 0.58 +0.4 3,622,826 + HP15_3444 0.76 -0.9 3,622,836 - HP15_3444 0.77 +0.8 3,623,108 + HP15_3445 0.11 -0.1 3,623,145 + HP15_3445 0.17 +0.4 3,623,146 + HP15_3445 0.17 -0.1 3,623,164 + HP15_3445 0.20 +0.2 3,623,190 + HP15_3445 0.25 +0.3 3,623,195 + HP15_3445 0.25 -0.3 3,623,198 - HP15_3445 0.26 +0.5 3,623,229 + HP15_3445 0.31 +0.1 3,623,246 - HP15_3445 0.34 -1.0 3,623,259 + HP15_3445 0.36 +0.3 3,623,259 + HP15_3445 0.36 +0.9 3,623,259 + HP15_3445 0.36 +0.7 3,623,259 + HP15_3445 0.36 +1.3 3,623,267 - HP15_3445 0.38 +0.5 3,623,267 - HP15_3445 0.38 +1.3 3,623,299 + HP15_3445 0.43 -0.2 3,623,309 + HP15_3445 0.45 +0.1 3,623,417 - HP15_3445 0.63 +0.7 3,623,430 + HP15_3445 0.65 +0.0 3,623,588 + -0.3 3,623,593 + +0.1 3,623,727 + -0.9 3,623,802 + -0.7 3,623,802 + -0.2 3,623,810 - +0.8 3,623,853 - HP15_3446 0.10 +0.2 3,623,874 - HP15_3446 0.11 -0.0 3,623,897 - HP15_3446 0.13 -0.1 3,624,000 + HP15_3446 0.17 -0.0 3,624,009 + HP15_3446 0.18 +1.0 3,624,331 - HP15_3446 0.33 +0.7 3,624,423 + HP15_3446 0.37 +0.6 3,624,423 + HP15_3446 0.37 -0.0 3,624,423 + HP15_3446 0.37 +0.4 3,624,431 - HP15_3446 0.38 +0.3 3,624,461 + HP15_3446 0.39 +0.9 3,624,602 + HP15_3446 0.46 +0.2 3,624,603 + HP15_3446 0.46 +0.1 3,624,603 + HP15_3446 0.46 +0.4 3,624,610 - HP15_3446 0.46 -0.2 3,624,631 + HP15_3446 0.47 +0.3
Or see this region's nucleotide sequence