Strain Fitness in Marinobacter adhaerens HP15 around HP15_3282

Experiment: m.b. Phosphomycin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3281 and HP15_3282 are separated by 243 nucleotidesHP15_3282 and HP15_3283 overlap by 4 nucleotidesHP15_3283 and HP15_3284 are separated by 25 nucleotides HP15_3281: HP15_3281 - LPS-assembly protein precursor, at 3,438,355 to 3,440,676 _3281 HP15_3282: HP15_3282 - aminoglycoside phosphotransferase, at 3,440,920 to 3,441,978 _3282 HP15_3283: HP15_3283 - nucleotidyltransferase family protein, at 3,441,975 to 3,442,673 _3283 HP15_3284: HP15_3284 - DnaJ-like membrane chaperone protein, at 3,442,699 to 3,443,421 _3284 Position (kb) 3440 3441 3442Strain fitness (log2 ratio) -3 -2 -1 0 1at 3440.856 kb on + strandat 3441.279 kb on - strand, within HP15_3282at 3441.318 kb on - strand, within HP15_3282at 3441.689 kb on + strand, within HP15_3282at 3441.700 kb on + strand, within HP15_3282at 3441.747 kb on + strand, within HP15_3282at 3442.750 kb on - strandat 3442.881 kb on + strand, within HP15_3284at 3442.881 kb on + strand, within HP15_3284at 3442.889 kb on - strand, within HP15_3284

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Phosphomycin 1 mg/ml
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3,440,856 + +0.5
3,441,279 - HP15_3282 0.34 -1.1
3,441,318 - HP15_3282 0.38 +0.4
3,441,689 + HP15_3282 0.73 -3.6
3,441,700 + HP15_3282 0.74 -2.4
3,441,747 + HP15_3282 0.78 -0.9
3,442,750 - -0.7
3,442,881 + HP15_3284 0.25 +0.1
3,442,881 + HP15_3284 0.25 +0.2
3,442,889 - HP15_3284 0.26 -0.2

Or see this region's nucleotide sequence